Merge branch 'master' into feat/issue-642-sanctioned-restart-controls

Adds a gated `system.restart_namespace` action so operators and workers can
restart or gracefully reload MCP namespaces through an authorized, audited
path instead of manual host process killing (#630).

- webui/sanctioned_restart.py: restart/reload operation model, dry-run
  intent preview, confirmation-string enforcement, audit emission, and
  post-restart health verification. Fails closed on unknown auth, missing
  capability, or ambiguous target namespace.
- webui/console_authz.py: RBAC entries for the restart capability with
  secret redaction preserved.
- webui/gated_actions.py: registers the restart action in the gated action
  framework so it cannot be invoked without capability + confirmation.
- task_capability_map.py: capability mapping for the restart operation.
- docs/sanctioned-restart-controls.md: operator documentation for the
  sanctioned path and the explicit prohibition on pkill recovery.
- docs/webui-authz-audit.md: audit model updated for restart events.
- tests/test_webui_sanctioned_restart.py: authorized preview, unauthorized
  deny, confirmation enforcement, contamination classification, and audit
  emission coverage.

No unrestricted kill path is exposed; manual pkill remains classified as
contamination and continues to block clean claims.

Co-Authored-By: Claude Opus 4.8 (1M context) <[email protected]>

docs/sanctioned-restart-controls.md

@@ -0,0 +1,122 @@
+# Sanctioned restart and graceful reload controls (#642)
+
+Sessions used to recover MCP connectivity by killing the host daemon
+(`pkill -f mcp_server.py`, #630). That is forbidden and stays forbidden: it
+kills every namespace on the host, contaminates whichever session survives, and
+leaves no audit trail. This document describes the sanctioned replacement,
+implemented in `webui/sanctioned_restart.py`.
+
+## What the console will and will not do
+
+The console **never** restarts anything. It authorizes an intent, records it,
+and hands off to a host supervisor. There is no code path in which the console
+sends a signal, spawns a process, or renders a kill command — a regression test
+asserts the module contains no `subprocess`, `signal`, `os.kill`, `os.system`,
+or `popen` reference, and that no returned payload contains a kill command.
+
+## Operations
+
+| Mode | Action | Minimum role | Behaviour |
+|------|--------|--------------|-----------|
+| `reload` | `system.reload_namespace` | controller | Host supervisor reloads the namespace in place, draining in-flight requests. |
+| `restart` | `system.restart_namespace` | admin | Host supervisor restarts the namespace. In-flight requests are lost. |
+
+Scope is always exactly one namespace. A fleet-wide restart is an explicit
+non-goal: `all`, `*`, `fleet`, and an empty scope are refused with
+`fleet_scope_not_permitted`, because that is precisely the blast radius the
+forbidden kill already had. An unrecognised namespace is refused rather than
+passed through to the host.
+
+## The gate sequence
+
+`assess_restart_request()` applies every gate in order and reports the first
+failure with a stable reason code:
+
+| Order | Gate | Reason code on failure |
+|-------|------|------------------------|
+| 1 | Mode is `restart` or `reload` | `unknown_mode` |
+| 2 | Scope is a single known namespace | `fleet_scope_not_permitted`, `unknown_namespace` |
+| 3 | Principal holds the required console role | `unauthorized` |
+| 4 | Confirmation phrase supplied | `confirmation_required` |
+| 5 | Confirmation names this namespace and mode | `confirmation_mismatch` |
+| 6 | Out-of-band operator authorization present | `operator_authorization_missing` |
+| 7 | Runtime is not contaminated | `contaminated_runtime` |
+| 8 | Host restart hook configured | `restart_hook_not_configured` |
+
+Passing every gate yields `host_action_required`, never "restarted".
+
+### Confirmation binds the namespace
+
+The required phrase is `"<mode> <namespace>"` — for example
+`restart gitea-author`. Binding the namespace into the phrase is the point: a
+confirmation typed for one namespace cannot be replayed against another.
+
+### Operator authorization is not self-assertable
+
+Host daemon maintenance is authorized out of band through
+`GITEA_OPERATOR_DAEMON_MAINTENANCE_AUTHORIZATION`, read from the process
+environment and nowhere else (#630; #710 finding F1). A worker session cannot
+set an environment variable for an already-running daemon, so this cannot be
+faked the way a tool argument could.
+
+### The host hook
+
+`GITEA_SANCTIONED_RESTART_HOOK` holds an opaque reference the *host* resolves —
+a supervisor label such as a launchd job name, never a command line. With no
+hook configured the request is refused; the console does not fall back to a
+process kill. The value is read server-side and never rendered to a client.
+
+## Manual kill remains contamination
+
+`classify_restart_command()` classifies an operator-proposed recovery command.
+A manual `pkill`/`kill`/`killall` of the MCP daemon is contamination, not a
+restart: it returns `clean_claim_allowed: false` and builds a durable
+contamination marker (redacted command only, never secrets) naming
+`system.restart_namespace` as the sanctioned alternative.
+
+A live, uncleared contamination marker also blocks a restart. This is stricter
+than #630's task-scoped gate, which deliberately lets a contaminated worker keep
+commenting and handing off: restarting a contaminated runtime would launder the
+contamination rather than resolve it. Clear the marker through the reconciler
+path first.
+
+## Post-restart health verification
+
+After the host supervisor acts, `verify_post_restart_health()` decides whether
+the session may claim to be clean:
+
+| Status | Meaning | Clean claim |
+|--------|---------|-------------|
+| `clean` | Required tool callable, proven through the live client namespace | Allowed |
+| `unproven` | Reported healthy without live client-namespace evidence | Refused |
+| `unhealthy` | Probe failed | Refused |
+
+Only `probe_source=client_namespace` evidence clears a session. Static tool
+registration is not proof, and neither is an offline subprocess probe — an IDE
+client can hold a registered tool list while live calls fail with
+`client is closing: EOF` (see
+[`mcp-namespace-health.md`](mcp-namespace-health.md)).
+
+## Audit
+
+Every attempt — allowed or denied — is recorded through
+`webui.console_audit` with actor, target namespace, mode, result, and reason
+code, and is redacted before it is persisted. `system.restart_namespace` is
+break-glass, so its records are retained for 730 days. Records carry
+`process_kill_executed: false`, which is a fact about the code path rather than
+a claim: no such path exists.
+
+## Environment variables
+
+| Variable | Purpose |
+|----------|---------|
+| `GITEA_SANCTIONED_RESTART_HOOK` | Host supervisor reference; absent means restart is refused. |
+| `GITEA_OPERATOR_DAEMON_MAINTENANCE_AUTHORIZATION` | Out-of-band operator authorization reference. |
+| `WEBUI_AUDIT_LOG` | Console audit sink; absent means records are built but not persisted. |
+
+## Non-goals
+
+* No unrestricted `kill` from the UI, in any role, in any phase.
+* No fleet-wide restart.
+* No silent auto-restart loop: every attempt is confirmed and audited.
+* This does not implement the Phase 1 health API (#634).

docs/webui-authz-audit.md

@@ -91,6 +91,8 @@ already define, and a regression test asserts each mapping matches.
 | `close_pr` | controller | privileged | `gitea.pr.close` | Yes | No | No | 3 |
 | `merge_pr` | controller | privileged | `gitea.pr.merge` | Yes | **Yes** | **Yes** | 3 |
 | `delete_branch` | admin | destructive | `gitea.branch.delete` | Yes | **Yes** | **Yes** | 3 |
+| `system.reload_namespace` | controller | privileged | `runtime.reload_namespace` | Yes | No | No | 2 |
+| `system.restart_namespace` | admin | destructive | `runtime.restart_namespace` | Yes | **Yes** | **Yes** | 2 |
 
 **Dual control** means the acting principal may not be the sole authority: a
 second distinct principal must confirm. **Break-glass** means the action is
@@ -102,6 +104,13 @@ honouring it.
 `delete_branch` is admin-only rather than controller because it is the one
 irreversible action in the set.
 
+`system.restart_namespace` is admin-only for the same reason: restarting a
+namespace drops every in-flight request on it. `system.reload_namespace` drains
+first, so it is privileged but not destructive. Neither action is ever executed
+by the console — both hand off to a host supervisor, and neither exposes a raw
+process kill. See
+[`sanctioned-restart-controls.md`](sanctioned-restart-controls.md) (#642).
+
 ### Authorization decision
 
 `authorize(action_id, principal, for_execution=False)` returns a decision
@@ -199,8 +208,8 @@ breaking the request it describes.
 | Class | Applies to | Default |
 |-------|-----------|---------|
 | `standard` | Routine gated writes | 90 days |
-| `privileged` | `review_pr`, `close_pr`, and any unclassifiable action | 365 days |
-| `break_glass` | `merge_pr`, `delete_branch` | 730 days |
+| `privileged` | `review_pr`, `close_pr`, `system.reload_namespace`, and any unclassifiable action | 365 days |
+| `break_glass` | `merge_pr`, `delete_branch`, `system.restart_namespace` | 730 days |
 
 Each record carries its own class, day count, and computed `expires_at`, so
 retention is auditable per record rather than inferred from file age. An

gitea_mcp_server.py

@@ -11634,6 +11634,7 @@ def gitea_audit_worktree_cleanup(
     org: str | None = None,
     repo: str | None = None,
     ttl_hours: float = worktree_cleanup_audit.DEFAULT_TTL_HOURS,
+    merged_pr_limit: int = 200,
 ) -> dict:
     """Read-only: classify every session-owned worktree under ``branches/`` (#401).
 
@@ -11644,17 +11645,26 @@ def gitea_audit_worktree_cleanup(
     the active issue-lock branch is read from the local lock file and treated
     as active work. Deletes nothing and mutates no Gitea state.
 
-    Fails closed if the live open-PR list cannot be fetched: without it,
-    removability cannot be proven, so no candidates are returned.
+    Merged PRs are fetched as well, so an issue worktree can be linked to the
+    PR that owns its branch (#858). Such a worktree only becomes removable
+    when that owning PR is unambiguous and merged, the worktree head is
+    already contained in authoritative master, and nothing else protects it —
+    no open or competing PR, lease, issue lock, live session, dirty file, or
+    protected/control checkout. Anything unproven keeps it classified as
+    active issue work.
+
+    Fails closed if the live open-PR list, the merged-PR list, or the
+    control-plane lease state cannot be read: without them removability
+    cannot be proven, so no candidates are returned.
 
     Args:
         remote: Known instance — 'dadeschools' or 'prgs'.
         host: Override the Gitea host.
         org: Override the owner/organization.
         repo: Override the repository name.
-        ttl_hours: Age (hours) after which a clean issue/conflict-fix
-            worktree becomes stale-removable (default from
-            GITEA_WORKTREE_TTL_HOURS).
+        ttl_hours: Age (hours) after which a clean conflict-fix worktree
+            becomes stale-removable (default from GITEA_WORKTREE_TTL_HOURS).
+        merged_pr_limit: Max closed PRs scanned for merged-PR ownership.
 
     Returns:
         dict with per-worktree classifications, counts, removable
@@ -11690,22 +11700,84 @@ def gitea_audit_worktree_cleanup(
         if (pr.get("head") or {}).get("ref")
     }
 
+    # #858: merged PRs are the ownership evidence that lets a landed issue
+    # worktree stop being reported as active work. Without them the audit can
+    # never agree with the PR-scoped reconciler, so treat a fetch failure the
+    # same way an open-PR fetch failure is treated: fail closed.
+    try:
+        closed_prs = api_get_all(
+            f"{repo_api_url(h, o, r)}/pulls?state=closed", auth, limit=merged_pr_limit
+        )
+    except Exception as exc:
+        return {
+            "success": False,
+            "performed": False,
+            "open_pr_state_verified": True,
+            "merged_pr_state_verified": False,
+            "reasons": [
+                "could not fetch merged PRs; worktree ownership unverified "
+                f"(fail closed): {_redact(str(exc))}"
+            ],
+        }
+    merged_prs = [pr for pr in closed_prs if (pr.get("merged") or pr.get("merged_at"))]
+    pr_index = worktree_cleanup_audit.build_pr_index(list(open_prs) + merged_prs)
+
+    # #858: the auditor already accepted lease evidence but nothing ever
+    # supplied it, so every worktree looked unleased. Removability is now
+    # reachable for issue worktrees, so authoritative control-plane leases
+    # must be readable or the audit fails closed.
+    db, lease_errs = _control_plane_db_or_error()
+    if db is None:
+        return {
+            "success": False,
+            "performed": False,
+            "open_pr_state_verified": True,
+            "merged_pr_state_verified": True,
+            "lease_state_verified": False,
+            "reasons": [
+                "could not read control-plane leases; worktree protection "
+                "unverified (fail closed)",
+                *lease_errs,
+            ],
+        }
+    lease_result = lease_lifecycle.list_active_leases(
+        db, remote=remote, org=o, repo=r, include_non_active=False, limit=500
+    )
+    leased_issue_numbers: set[int] = set()
+    live_session_paths: set[str] = set()
+    for lease in lease_result.get("leases") or []:
+        if lease.get("work_kind") == "issue" and lease.get("work_number") is not None:
+            try:
+                leased_issue_numbers.add(int(lease["work_number"]))
+            except (TypeError, ValueError):
+                pass
+        if lease.get("worktree_path"):
+            live_session_paths.add(str(lease["worktree_path"]))
+
     active_issue_branches: set[str] = set()
     lock = merged_cleanup_reconcile.read_issue_lock(ISSUE_LOCK_FILE)
     if lock and lock.get("branch_name"):
         active_issue_branches.add(str(lock["branch_name"]).strip())
 
+    master_ref = f"{remote}/master" if remote in REMOTES else "origin/master"
     report = worktree_cleanup_audit.audit_branches_directory(
         _canonical_local_git_root(),
         open_pr_branches=open_pr_branches,
         active_issue_branches=active_issue_branches,
         now=datetime.now(timezone.utc),
         ttl_hours=ttl_hours,
+        pr_index=pr_index,
+        leased_issue_numbers=leased_issue_numbers,
+        live_session_paths=live_session_paths,
+        master_ref=master_ref,
     )
     return {
         "success": True,
         "performed": False,
         "open_pr_state_verified": True,
+        "merged_pr_state_verified": True,
+        "lease_state_verified": True,
+        "master_ref": master_ref,
         "task_mode": "work-issue",
         **report,
     }

task_capability_map.py

@@ -335,6 +335,21 @@ TASK_CAPABILITY_MAP: dict[str, dict[str, str]] = {
         "role": "controller",
     },
 
+    # #642: sanctioned host-daemon lifecycle controls. Deliberately *not* a
+    # ``gitea.*`` operation — restarting an MCP namespace is a host action, not
+    # a Gitea API call, and no configured Gitea profile should be able to
+    # satisfy it by accident. Authority comes from the console RBAC model plus
+    # out-of-band operator authorization (#630); these entries exist so the
+    # console cannot invent an authority the capability layer never declared.
+    "restart_namespace": {
+        "permission": "runtime.restart_namespace",
+        "role": "controller",
+    },
+    "reload_namespace": {
+        "permission": "runtime.reload_namespace",
+        "role": "controller",
+    },
+
     # #601 first-class lease lifecycle — inspect/list need read; mutations gate on
     # ownership in the control-plane DB (not a separate Gitea write permission).
     "list_workflow_leases": {

tests/test_issue_858_audit_merged_pr_aware.py

@@ -0,0 +1,551 @@
+"""Merged-PR awareness for the worktree cleanup audit (#858).
+
+Before #858 an ``issue_work`` worktree could never leave ``active_issue_work``:
+the audit had no PR linkage at all (``pr_number`` was structurally ``None``)
+and its only route to ``clean_stale_removable`` was a TTL derived from a
+``last_used_at`` that nothing ever populated. A merged, clean, unprotected
+worktree was therefore reported as active work forever, disagreeing with the
+PR-scoped reconciler.
+
+These tests use fabricated temporary repositories and synthetic PR records
+only. Nothing here removes a worktree or deletes a branch.
+"""
+
+import os
+import subprocess
+import sys
+import tempfile
+import unittest
+from unittest.mock import patch
+
+sys.path.insert(0, str(__import__("pathlib").Path(__file__).resolve().parent.parent))
+
+import merged_cleanup_reconcile as mcr  # noqa: E402
+import worktree_cleanup_audit as wca  # noqa: E402
+
+
+MERGED_BRANCH = "feat/issue-777-timeline"
+MERGED_PATH = "/repo/branches/issue-777-timeline"
+HEAD_SHA = "a" * 40
+
+
+def _pr(number, branch, *, merged=True, sha=HEAD_SHA, state=None):
+    """Synthetic Gitea PR payload."""
+    return {
+        "number": number,
+        "head": {"ref": branch, "sha": sha},
+        "merged_at": "2026-07-24T01:00:00Z" if merged else None,
+        "state": state or ("closed" if merged else "open"),
+    }
+
+
+def _porcelain(*entries):
+    out = []
+    for path, branch, sha in entries:
+        out.append(f"worktree {path}")
+        out.append(f"HEAD {sha}")
+        if branch is None:
+            out.append("detached")
+        else:
+            out.append(f"branch refs/heads/{branch}")
+        out.append("")
+    return "\n".join(out)
+
+
+class _AuditHarness(unittest.TestCase):
+    """Runs audit_branches_directory over a fabricated worktree listing."""
+
+    PORCELAIN = _porcelain(
+        ("/repo", "master", "f" * 40),
+        (MERGED_PATH, MERGED_BRANCH, HEAD_SHA),
+    )
+
+    def run_audit(self, *, dirty_paths=(), contained=True, **kwargs):
+        def fake_dirty(path):
+            if path in dirty_paths:
+                return {"exists": True, "dirty": True, "dirty_files": [" M x.py"]}
+            return {"exists": True, "dirty": False, "dirty_files": []}
+
+        with patch.object(
+            wca, "list_worktrees",
+            return_value=wca.parse_worktree_porcelain(self.PORCELAIN),
+        ), patch.object(
+            wca, "read_worktree_dirty", side_effect=fake_dirty
+        ), patch.object(
+            wca, "git_worktree_list", return_value="(mocked)"
+        ), patch.object(
+            wca, "is_head_ancestor_of_ref", return_value=contained
+        ):
+            report = wca.audit_branches_directory("/repo", **kwargs)
+        return {wt["path"]: wt for wt in report["worktrees"]}, report
+
+    def merged_audit(self, **kwargs):
+        kwargs.setdefault("pr_index", wca.build_pr_index([_pr(849, MERGED_BRANCH)]))
+        kwargs.setdefault("master_ref", "prgs/master")
+        return self.run_audit(**kwargs)
+
+
+class TestMergedWorktreeBecomesRemovable(_AuditHarness):
+    def test_clean_merged_issue_worktree_is_linked_and_removable(self):
+        by_path, report = self.merged_audit()
+        entry = by_path[MERGED_PATH]
+
+        self.assertEqual(entry["classification"], wca.CLASS_CLEAN_STALE_REMOVABLE)
+        self.assertTrue(entry["removable"])
+        self.assertEqual(entry["merged_pr_linkage"]["status"], wca.LINKAGE_MERGED)
+        self.assertEqual(entry["merged_pr_cleanup"]["block_reasons"], [])
+        self.assertIn(MERGED_PATH, [c["path"] for c in report["removable_candidates"]])
+
+    def test_pr_number_populated_from_authoritative_linkage(self):
+        by_path, _ = self.merged_audit()
+        self.assertEqual(by_path[MERGED_PATH]["pr_number"], 849)
+
+    def test_regression_without_pr_evidence_stays_active_issue_work(self):
+        """The pre-#858 behaviour, still correct when no PR state is supplied."""
+        by_path, _ = self.run_audit()
+        entry = by_path[MERGED_PATH]
+        self.assertEqual(entry["classification"], wca.CLASS_ACTIVE_ISSUE_WORK)
+        self.assertFalse(entry["removable"])
+        self.assertIsNone(entry["pr_number"])
+
+
+class TestProtectiveSignalsSurvive(_AuditHarness):
+    def test_open_pr_worktree_is_not_removable(self):
+        index = wca.build_pr_index([_pr(900, MERGED_BRANCH, merged=False)])
+        by_path, _ = self.run_audit(
+            pr_index=index,
+            master_ref="prgs/master",
+            open_pr_branches={MERGED_BRANCH},
+        )
+        entry = by_path[MERGED_PATH]
+        self.assertEqual(entry["classification"], wca.CLASS_ACTIVE_OPEN_PR)
+        self.assertFalse(entry["removable"])
+        # linkage still reports the owning PR, it just is not merge proof
+        self.assertEqual(entry["merged_pr_linkage"]["status"], wca.LINKAGE_OPEN)
+        self.assertEqual(entry["pr_number"], 900)
+
+    def test_dirty_tracked_worktree_is_not_removable(self):
+        by_path, _ = self.merged_audit(dirty_paths=(MERGED_PATH,))
+        entry = by_path[MERGED_PATH]
+        self.assertEqual(entry["classification"], wca.CLASS_DIRTY_LOCAL)
+        self.assertFalse(entry["removable"])
+        self.assertIn(
+            "worktree has uncommitted changes",
+            entry["merged_pr_cleanup"]["block_reasons"],
+        )
+
+    def test_untracked_only_worktree_is_not_removable(self):
+        """``git status --porcelain`` reports untracked files as dirty too."""
+        def untracked(path):
+            if path == MERGED_PATH:
+                return {"exists": True, "dirty": True, "dirty_files": ["?? scratch.txt"]}
+            return {"exists": True, "dirty": False, "dirty_files": []}
+
+        with patch.object(
+            wca, "list_worktrees",
+            return_value=wca.parse_worktree_porcelain(self.PORCELAIN),
+        ), patch.object(
+            wca, "read_worktree_dirty", side_effect=untracked
+        ), patch.object(
+            wca, "git_worktree_list", return_value="(mocked)"
+        ), patch.object(
+            wca, "is_head_ancestor_of_ref", return_value=True
+        ):
+            report = wca.audit_branches_directory(
+                "/repo",
+                pr_index=wca.build_pr_index([_pr(849, MERGED_BRANCH)]),
+                master_ref="prgs/master",
+            )
+        entry = {wt["path"]: wt for wt in report["worktrees"]}[MERGED_PATH]
+        self.assertEqual(entry["classification"], wca.CLASS_DIRTY_LOCAL)
+        self.assertFalse(entry["removable"])
+
+    def test_active_lease_by_issue_number_is_protective(self):
+        by_path, _ = self.merged_audit(leased_issue_numbers={777})
+        entry = by_path[MERGED_PATH]
+        self.assertTrue(entry["has_active_lease"])
+        self.assertEqual(entry["classification"], wca.CLASS_ACTIVE_ISSUE_WORK)
+        self.assertFalse(entry["removable"])
+
+    def test_active_lease_by_branch_is_protective(self):
+        by_path, _ = self.merged_audit(leased_branches={MERGED_BRANCH})
+        entry = by_path[MERGED_PATH]
+        self.assertTrue(entry["has_active_lease"])
+        self.assertFalse(entry["removable"])
+
+    def test_active_issue_lock_is_protective(self):
+        by_path, _ = self.merged_audit(active_issue_branches={MERGED_BRANCH})
+        entry = by_path[MERGED_PATH]
+        self.assertTrue(entry["has_active_issue_lock"])
+        self.assertEqual(entry["classification"], wca.CLASS_ACTIVE_ISSUE_WORK)
+        self.assertFalse(entry["removable"])
+
+    def test_live_session_worktree_is_protective(self):
+        by_path, _ = self.merged_audit(live_session_paths={MERGED_PATH})
+        entry = by_path[MERGED_PATH]
+        self.assertTrue(entry["has_live_session"])
+        self.assertEqual(entry["classification"], wca.CLASS_ACTIVE_ISSUE_WORK)
+        self.assertFalse(entry["removable"])
+
+    def test_head_not_contained_in_master_is_not_removable(self):
+        by_path, _ = self.merged_audit(contained=False)
+        entry = by_path[MERGED_PATH]
+        self.assertEqual(entry["classification"], wca.CLASS_ACTIVE_ISSUE_WORK)
+        self.assertFalse(entry["removable"])
+        self.assertIn(
+            "worktree head is not contained in authoritative master "
+            "(unmerged commits remain)",
+            entry["merged_pr_cleanup"]["block_reasons"],
+        )
+
+    def test_unknown_containment_fails_closed(self):
+        by_path, _ = self.merged_audit(contained=None)
+        entry = by_path[MERGED_PATH]
+        self.assertFalse(entry["removable"])
+        self.assertIn(
+            "containment of the worktree head in master is unknown",
+            entry["merged_pr_cleanup"]["block_reasons"],
+        )
+
+    def test_missing_master_ref_fails_closed(self):
+        by_path, _ = self.run_audit(
+            pr_index=wca.build_pr_index([_pr(849, MERGED_BRANCH)])
+        )
+        self.assertFalse(by_path[MERGED_PATH]["removable"])
+
+    def test_unmerged_owning_pr_is_not_removable(self):
+        index = wca.build_pr_index([_pr(901, MERGED_BRANCH, merged=False)])
+        by_path, _ = self.run_audit(pr_index=index, master_ref="prgs/master")
+        entry = by_path[MERGED_PATH]
+        self.assertFalse(entry["removable"])
+        self.assertIn(
+            "owning PR #901 is not merged",
+            entry["merged_pr_cleanup"]["block_reasons"],
+        )
+
+    def test_control_checkout_is_never_removable(self):
+        by_path, _ = self.merged_audit()
+        control = by_path["/repo"]
+        self.assertTrue(control["is_protected"])
+        self.assertEqual(control["classification"], wca.CLASS_UNSAFE_UNKNOWN)
+        self.assertFalse(control["removable"])
+
+    def test_control_checkout_not_removable_even_if_linked_and_merged(self):
+        """A merged PR on the control checkout must not unlock removal."""
+        porcelain = _porcelain(("/repo", MERGED_BRANCH, HEAD_SHA))
+        with patch.object(
+            wca, "list_worktrees", return_value=wca.parse_worktree_porcelain(porcelain)
+        ), patch.object(
+            wca, "read_worktree_dirty",
+            return_value={"exists": True, "dirty": False, "dirty_files": []},
+        ), patch.object(
+            wca, "git_worktree_list", return_value="(mocked)"
+        ), patch.object(
+            wca, "is_head_ancestor_of_ref", return_value=True
+        ):
+            report = wca.audit_branches_directory(
+                "/repo",
+                pr_index=wca.build_pr_index([_pr(849, MERGED_BRANCH)]),
+                master_ref="prgs/master",
+            )
+        entry = report["worktrees"][0]
+        self.assertEqual(entry["classification"], wca.CLASS_UNSAFE_UNKNOWN)
+        self.assertFalse(entry["removable"])
+
+
+class TestAmbiguousLinkageFailsClosed(_AuditHarness):
+    def test_competing_prs_on_one_branch_fail_closed(self):
+        index = wca.build_pr_index(
+            [_pr(849, MERGED_BRANCH), _pr(860, MERGED_BRANCH)]
+        )
+        by_path, _ = self.run_audit(pr_index=index, master_ref="prgs/master")
+        entry = by_path[MERGED_PATH]
+        self.assertEqual(entry["merged_pr_linkage"]["status"], wca.LINKAGE_AMBIGUOUS)
+        self.assertIsNone(entry["pr_number"])
+        self.assertEqual(entry["classification"], wca.CLASS_ACTIVE_ISSUE_WORK)
+        self.assertFalse(entry["removable"])
+
+    def test_merged_plus_open_pr_on_one_branch_fails_closed(self):
+        index = wca.build_pr_index(
+            [_pr(849, MERGED_BRANCH), _pr(861, MERGED_BRANCH, merged=False)]
+        )
+        by_path, _ = self.run_audit(pr_index=index, master_ref="prgs/master")
+        entry = by_path[MERGED_PATH]
+        self.assertEqual(entry["merged_pr_linkage"]["status"], wca.LINKAGE_AMBIGUOUS)
+        self.assertFalse(entry["removable"])
+
+    def test_no_owning_pr_fails_closed(self):
+        by_path, _ = self.run_audit(
+            pr_index=wca.build_pr_index([_pr(849, "feat/other-branch")]),
+            master_ref="prgs/master",
+        )
+        entry = by_path[MERGED_PATH]
+        self.assertEqual(entry["merged_pr_linkage"]["status"], wca.LINKAGE_NONE)
+        self.assertFalse(entry["removable"])
+
+    def test_malformed_pr_records_are_dropped_not_guessed(self):
+        index = wca.build_pr_index(
+            [
+                {"number": None, "head": {"ref": MERGED_BRANCH}},
+                {"number": 5, "head": {}},
+                {"number": "not-an-int", "head": {"ref": MERGED_BRANCH}},
+            ]
+        )
+        self.assertEqual(index, {})
+        self.assertEqual(
+            wca.resolve_owning_pr(branch=MERGED_BRANCH, pr_index=index)["status"],
+            wca.LINKAGE_NONE,
+        )
+
+    def test_detached_worktree_has_no_branch_linkage(self):
+        self.assertEqual(
+            wca.resolve_owning_pr(branch=None, pr_index={})["status"],
+            wca.LINKAGE_UNKNOWN,
+        )
+
+
+class TestUnrelatedClassificationsUnchanged(unittest.TestCase):
+    """Non-issue_work worktrees keep their pre-#858 classifications."""
+
+    PORCELAIN = _porcelain(
+        ("/repo", "master", "f" * 40),
+        ("/repo/branches/review-pr42", "review-pr42", "2" * 40),
+        ("/repo/branches/baseline-master-x", "baseline-master-x", "3" * 40),
+        ("/repo/branches/conflict-fix-pr50", "conflict-fix-pr50", "4" * 40),
+        ("/repo/branches/review-pr99", None, "5" * 40),
+    )
+
+    def _audit(self, **kwargs):
+        with patch.object(
+            wca, "list_worktrees",
+            return_value=wca.parse_worktree_porcelain(self.PORCELAIN),
+        ), patch.object(
+            wca, "read_worktree_dirty",
+            return_value={"exists": True, "dirty": False, "dirty_files": []},
+        ), patch.object(
+            wca, "git_worktree_list", return_value="(mocked)"
+        ), patch.object(
+            wca, "is_head_ancestor_of_ref", return_value=True
+        ):
+            report = wca.audit_branches_directory("/repo", **kwargs)
+        return {wt["path"]: wt for wt in report["worktrees"]}
+
+    def test_classifications_identical_with_and_without_pr_evidence(self):
+        without = self._audit()
+        with_evidence = self._audit(
+            pr_index=wca.build_pr_index([_pr(849, MERGED_BRANCH)]),
+            master_ref="prgs/master",
+        )
+        self.assertEqual(
+            {p: e["classification"] for p, e in without.items()},
+            {p: e["classification"] for p, e in with_evidence.items()},
+        )
+
+    def test_lease_on_issue_does_not_capture_similarly_named_scratch_trees(self):
+        """A lease on issue 777 protects issue work, not baseline/review trees."""
+        porcelain = _porcelain(
+            ("/repo/branches/baseline-master-issue-777", "baseline-issue-777", "7" * 40),
+            ("/repo/branches/issue-777-timeline", MERGED_BRANCH, HEAD_SHA),
+        )
+        with patch.object(
+            wca, "list_worktrees", return_value=wca.parse_worktree_porcelain(porcelain)
+        ), patch.object(
+            wca, "read_worktree_dirty",
+            return_value={"exists": True, "dirty": False, "dirty_files": []},
+        ), patch.object(
+            wca, "git_worktree_list", return_value="(mocked)"
+        ), patch.object(
+            wca, "is_head_ancestor_of_ref", return_value=True
+        ):
+            report = wca.audit_branches_directory(
+                "/repo",
+                pr_index=wca.build_pr_index([_pr(849, MERGED_BRANCH)]),
+                master_ref="prgs/master",
+                leased_issue_numbers={777},
+            )
+        by_path = {wt["path"]: wt for wt in report["worktrees"]}
+
+        baseline = by_path["/repo/branches/baseline-master-issue-777"]
+        self.assertFalse(baseline["has_active_lease"])
+        self.assertEqual(baseline["classification"], wca.CLASS_CLEAN_STALE_REMOVABLE)
+
+        issue_work = by_path["/repo/branches/issue-777-timeline"]
+        self.assertTrue(issue_work["has_active_lease"])
+        self.assertFalse(issue_work["removable"])
+
+    def test_review_and_baseline_still_removable(self):
+        by_path = self._audit(
+            pr_index=wca.build_pr_index([]), master_ref="prgs/master"
+        )
+        self.assertEqual(
+            by_path["/repo/branches/review-pr42"]["classification"],
+            wca.CLASS_CLEAN_STALE_REMOVABLE,
+        )
+        self.assertEqual(
+            by_path["/repo/branches/baseline-master-x"]["classification"],
+            wca.CLASS_CLEAN_STALE_REMOVABLE,
+        )
+        self.assertEqual(
+            by_path["/repo/branches/review-pr99"]["classification"],
+            wca.CLASS_DETACHED_REVIEW_LEFTOVER,
+        )
+
+    def test_conflict_fix_ttl_behaviour_unchanged(self):
+        """conflict_fix still needs only TTL expiry; #858 did not touch it."""
+        self.assertEqual(
+            wca.classify_worktree(
+                workflow_type=wca.WORKFLOW_CONFLICT_FIX,
+                is_dirty=False,
+                ttl_expired=True,
+            ),
+            wca.CLASS_CLEAN_STALE_REMOVABLE,
+        )
+        self.assertEqual(
+            wca.classify_worktree(
+                workflow_type=wca.WORKFLOW_CONFLICT_FIX,
+                is_dirty=False,
+                ttl_expired=False,
+            ),
+            wca.CLASS_ACTIVE_ISSUE_WORK,
+        )
+
+    def test_issue_work_ttl_alone_no_longer_grants_removal(self):
+        """Age is not landing proof: TTL alone must not reclaim issue work."""
+        self.assertEqual(
+            wca.classify_worktree(
+                workflow_type=wca.WORKFLOW_ISSUE_WORK,
+                is_dirty=False,
+                ttl_expired=True,
+            ),
+            wca.CLASS_ACTIVE_ISSUE_WORK,
+        )
+
+
+class TestAssessorPerformsNoDeletion(_AuditHarness):
+    def test_audit_never_removes_a_worktree(self):
+        with patch.object(wca, "remove_worktree") as removal:
+            self.merged_audit()
+        removal.assert_not_called()
+
+    def test_audit_shells_out_to_no_destructive_git_command(self):
+        seen = []
+        real_run = subprocess.run
+
+        def recording_run(cmd, *args, **kwargs):
+            seen.append(cmd)
+            return real_run(["true"], *args, **kwargs)
+
+        with patch.object(subprocess, "run", side_effect=recording_run):
+            wca.audit_branches_directory("/nonexistent-repo-for-audit")
+
+        joined = [" ".join(c) if isinstance(c, list) else str(c) for c in seen]
+        for cmd in joined:
+            self.assertNotIn("worktree remove", cmd)
+            self.assertNotIn("branch -D", cmd)
+            self.assertNotIn("push", cmd)
+
+
+class TestAgreementWithPrScopedReconciler(unittest.TestCase):
+    """The audit and merged_cleanup_reconcile must agree on identical input.
+
+    Uses a real throwaway git repository so containment is computed by git
+    rather than asserted. Nothing outside the temporary directory is touched.
+    """
+
+    def _git(self, *args):
+        subprocess.run(
+            ["git", "-C", self.root, *args],
+            check=True,
+            capture_output=True,
+            text=True,
+        )
+
+    def setUp(self):
+        self._tmp = tempfile.TemporaryDirectory()
+        self.root = os.path.realpath(self._tmp.name)
+        self._git("init", "-b", "master", ".")
+        self._git("config", "user.email", "[email protected]")
+        self._git("config", "user.name", "Test")
+        with open(os.path.join(self.root, "seed.txt"), "w") as fh:
+            fh.write("seed\n")
+        self._git("add", "seed.txt")
+        self._git("commit", "-m", "seed")
+
+        self.branch = "feat/issue-777-timeline"
+        self._git("checkout", "-b", self.branch)
+        with open(os.path.join(self.root, "feature.txt"), "w") as fh:
+            fh.write("feature\n")
+        self._git("add", "feature.txt")
+        self._git("commit", "-m", "feature")
+        self.head_sha = subprocess.run(
+            ["git", "-C", self.root, "rev-parse", "HEAD"],
+            capture_output=True, text=True, check=True,
+        ).stdout.strip()
+        self._git("checkout", "master")
+        self._git("merge", "--no-ff", "-m", "merge feature", self.branch)
+
+        self.worktree = os.path.join(self.root, "branches", "issue-777-timeline")
+        self._git("worktree", "add", self.worktree, self.branch)
+
+    def tearDown(self):
+        self._tmp.cleanup()
+
+    def _pr_index(self):
+        return wca.build_pr_index(
+            [
+                {
+                    "number": 849,
+                    "head": {"ref": self.branch, "sha": self.head_sha},
+                    "merged_at": "2026-07-24T01:00:00Z",
+                }
+            ]
+        )
+
+    def _audit_entry(self):
+        report = wca.audit_branches_directory(
+            self.root, pr_index=self._pr_index(), master_ref="master"
+        )
+        return next(wt for wt in report["worktrees"] if wt["path"] == self.worktree)
+
+    def _reconciler_entry(self):
+        return mcr.assess_local_worktree_cleanup(
+            pr_number=849,
+            head_branch=self.branch,
+            merged=True,
+            worktree_state=mcr.resolve_cleanup_worktree_state(
+                project_root=self.root,
+                head_branch=self.branch,
+                issue_number=777,
+                pr_head_sha=self.head_sha,
+                target_ref="master",
+            ),
+            active_lock=False,
+        )
+
+    def test_both_assessors_agree_the_worktree_is_safe(self):
+        audit_entry = self._audit_entry()
+        reconciler = self._reconciler_entry()
+
+        self.assertTrue(reconciler["safe_to_remove_worktree"], reconciler)
+        self.assertTrue(audit_entry["removable"], audit_entry)
+        self.assertEqual(audit_entry["pr_number"], reconciler["pr_number"])
+        self.assertEqual(audit_entry["merged_pr_cleanup"]["block_reasons"], [])
+        self.assertEqual(reconciler["block_reasons"], [])
+
+    def test_both_assessors_agree_a_dirty_worktree_is_unsafe(self):
+        with open(os.path.join(self.worktree, "feature.txt"), "a") as fh:
+            fh.write("local edit\n")
+
+        audit_entry = self._audit_entry()
+        reconciler = self._reconciler_entry()
+
+        self.assertFalse(audit_entry["removable"])
+        self.assertFalse(reconciler["safe_to_remove_worktree"])
+
+    def test_worktree_still_present_after_audit(self):
+        self._audit_entry()
+        self.assertTrue(os.path.isdir(self.worktree))
+
+
+if __name__ == "__main__":
+    unittest.main()

tests/test_webui_sanctioned_restart.py

@@ -0,0 +1,502 @@
+"""Sanctioned restart / graceful reload control tests (#642).
+
+Acceptance criteria under test:
+
+1. The sanctioned restart path is implemented behind gates (capability,
+   confirmation, operator authorization, host hook).
+2. Manual ``pkill`` stays forbidden and is classified as contamination.
+3. Post-restart mutations require clean health/session proof.
+4. Authorized restart preview, unauthorized deny, contamination classification.
+5. No entry point exposes a raw kill.
+"""
+
+import json
+import os
+import tempfile
+import unittest
+
+import mcp_namespace_health
+import runtime_recovery_guard
+from task_capability_map import TASK_CAPABILITY_MAP
+from webui import console_audit, console_authz, gated_actions, sanctioned_restart
+
+NAMESPACE = "gitea-author"
+
+# An operator-authorized, hook-configured host. Passed explicitly so no test
+# depends on (or mutates) the real process environment.
+READY_ENV = {
+    sanctioned_restart.RESTART_HOOK_ENV: "launchd:cc.prgs.gitea-author",
+    runtime_recovery_guard.OPERATOR_AUTHORIZATION_ENV: "ops-ticket-4821",
+}
+
+
+def admin(subject: str = "[email protected]") -> console_authz.Principal:
+    return console_authz.Principal(
+        subject=subject,
+        role=console_authz.ADMIN,
+        identity_source=console_authz.IDENTITY_ACCESS_PROXY,
+        authenticated=True,
+    )
+
+
+def viewer() -> console_authz.Principal:
+    return console_authz.Principal(
+        subject="[email protected]",
+        role=console_authz.VIEWER,
+        identity_source=console_authz.IDENTITY_ACCESS_PROXY,
+        authenticated=True,
+    )
+
+
+class TestCapabilityWiring(unittest.TestCase):
+    """AC1: authority is declared, not invented by the console."""
+
+    def test_actions_resolve_through_the_capability_map(self):
+        for action_id in (
+            sanctioned_restart.ACTION_RESTART_NAMESPACE,
+            sanctioned_restart.ACTION_RELOAD_NAMESPACE,
+        ):
+            with self.subTest(action=action_id):
+                action = console_authz.get_action(action_id)
+                self.assertIsNotNone(action)
+                self.assertIn(action.task_key, TASK_CAPABILITY_MAP)
+                self.assertEqual(
+                    action.mcp_permission,
+                    TASK_CAPABILITY_MAP[action.task_key]["permission"],
+                )
+
+    def test_restart_permission_is_not_a_gitea_operation(self):
+        """No configured Gitea profile should satisfy a host restart."""
+        permission = TASK_CAPABILITY_MAP["restart_namespace"]["permission"]
+        self.assertFalse(permission.startswith("gitea."))
+
+    def test_restart_is_destructive_dual_control_break_glass(self):
+        action = console_authz.get_action(
+            sanctioned_restart.ACTION_RESTART_NAMESPACE
+        )
+        self.assertEqual(action.action_class, console_authz.CLASS_DESTRUCTIVE)
+        self.assertEqual(action.minimum_role, console_authz.ADMIN)
+        self.assertTrue(action.dual_control)
+        self.assertTrue(action.break_glass)
+        self.assertTrue(action.requires_confirmation)
+
+    def test_reload_is_privileged_but_not_destructive(self):
+        action = console_authz.get_action(
+            sanctioned_restart.ACTION_RELOAD_NAMESPACE
+        )
+        self.assertEqual(action.action_class, console_authz.CLASS_PRIVILEGED)
+        self.assertTrue(action.requires_confirmation)
+
+
+class TestPreview(unittest.TestCase):
+    """AC4: an authorized preview renders the plan without executing it."""
+
+    def test_preview_lists_the_mutation_ledger(self):
+        preview = sanctioned_restart.build_restart_preview(
+            NAMESPACE, principal=admin(), env=READY_ENV
+        )
+        steps = [entry["step"] for entry in preview["mutation_ledger"]]
+        self.assertEqual(
+            steps, ["quiesce", "host_restart_hook", "health_recheck", "audit"]
+        )
+        self.assertTrue(preview["scope_valid"])
+        self.assertTrue(preview["post_restart_verification_required"])
+
+    def test_reload_preview_drains_instead_of_restarting(self):
+        preview = sanctioned_restart.build_restart_preview(
+            NAMESPACE, sanctioned_restart.MODE_RELOAD,
+            principal=admin(), env=READY_ENV,
+        )
+        steps = [entry["step"] for entry in preview["mutation_ledger"]]
+        self.assertIn("host_graceful_reload", steps)
+        self.assertNotIn("host_restart_hook", steps)
+
+    def test_preview_never_enables_execution(self):
+        preview = sanctioned_restart.build_restart_preview(
+            NAMESPACE, principal=admin(), env=READY_ENV
+        )
+        self.assertFalse(preview["execution_enabled"])
+        self.assertFalse(preview["authorization"]["execution_enabled"])
+
+    def test_confirmation_phrase_binds_the_namespace(self):
+        self.assertTrue(
+            sanctioned_restart.confirmation_matches(
+                NAMESPACE, sanctioned_restart.MODE_RESTART,
+                "restart gitea-author",
+            )
+        )
+        # A phrase typed for one namespace must not authorize another.
+        self.assertFalse(
+            sanctioned_restart.confirmation_matches(
+                "gitea-merger", sanctioned_restart.MODE_RESTART,
+                "restart gitea-author",
+            )
+        )
+
+
+class TestGates(unittest.TestCase):
+    """AC1/AC4: every gate denies with a stable reason code."""
+
+    def _assess(self, **kwargs):
+        params = {
+            "principal": admin(),
+            "confirmation": f"restart {NAMESPACE}",
+            "env": READY_ENV,
+        }
+        params.update(kwargs)
+        namespace = params.pop("namespace", NAMESPACE)
+        mode = params.pop("mode", sanctioned_restart.MODE_RESTART)
+        return sanctioned_restart.assess_restart_request(
+            namespace, mode, **params
+        )
+
+    def test_authorized_confirmed_request_passes_every_gate(self):
+        result = self._assess()
+        self.assertTrue(result["allowed"])
+        self.assertEqual(
+            result["reason_code"], sanctioned_restart.ALLOW_HOST_ACTION_REQUIRED
+        )
+
+    def test_passing_every_gate_is_not_an_execution_grant(self):
+        """An allowed request still never lets the console touch the process."""
+        result = self._assess()
+        self.assertTrue(result["allowed"])
+        self.assertFalse(result["execution_enabled"])
+        self.assertFalse(result["console_executes"])
+
+    def test_unauthorized_principal_is_denied(self):
+        result = self._assess(principal=viewer())
+        self.assertFalse(result["allowed"])
+        self.assertEqual(
+            result["reason_code"], sanctioned_restart.DENY_UNAUTHORIZED
+        )
+
+    def test_anonymous_principal_is_denied(self):
+        result = self._assess(principal=None)
+        self.assertFalse(result["allowed"])
+        self.assertEqual(
+            result["reason_code"], sanctioned_restart.DENY_UNAUTHORIZED
+        )
+
+    def test_missing_confirmation_is_denied(self):
+        result = self._assess(confirmation=None)
+        self.assertFalse(result["allowed"])
+        self.assertEqual(
+            result["reason_code"], sanctioned_restart.DENY_CONFIRMATION_MISSING
+        )
+
+    def test_confirmation_for_another_namespace_is_denied(self):
+        result = self._assess(confirmation="restart gitea-merger")
+        self.assertFalse(result["allowed"])
+        self.assertEqual(
+            result["reason_code"], sanctioned_restart.DENY_CONFIRMATION_MISMATCH
+        )
+
+    def test_missing_operator_authorization_is_denied(self):
+        env = {sanctioned_restart.RESTART_HOOK_ENV: "launchd:cc.prgs.author"}
+        result = self._assess(env=env)
+        self.assertFalse(result["allowed"])
+        self.assertEqual(
+            result["reason_code"],
+            sanctioned_restart.DENY_OPERATOR_AUTHORIZATION,
+        )
+
+    def test_missing_host_hook_is_denied_without_kill_fallback(self):
+        env = {
+            runtime_recovery_guard.OPERATOR_AUTHORIZATION_ENV: "ops-ticket-1",
+        }
+        result = self._assess(env=env)
+        self.assertFalse(result["allowed"])
+        self.assertEqual(
+            result["reason_code"], sanctioned_restart.DENY_HOOK_NOT_CONFIGURED
+        )
+
+    def test_fleet_scope_is_refused(self):
+        for scope in ("all", "*", "fleet"):
+            with self.subTest(scope=scope):
+                result = self._assess(
+                    namespace=scope, confirmation=f"restart {scope}"
+                )
+                self.assertFalse(result["allowed"])
+                self.assertEqual(
+                    result["reason_code"], sanctioned_restart.DENY_FLEET_SCOPE
+                )
+
+    def test_unknown_namespace_is_refused(self):
+        result = self._assess(
+            namespace="gitea-nope", confirmation="restart gitea-nope"
+        )
+        self.assertFalse(result["allowed"])
+        self.assertEqual(
+            result["reason_code"], sanctioned_restart.DENY_UNKNOWN_NAMESPACE
+        )
+
+    def test_unknown_mode_is_refused(self):
+        result = self._assess(mode="obliterate")
+        self.assertFalse(result["allowed"])
+        self.assertEqual(
+            result["reason_code"], sanctioned_restart.DENY_UNKNOWN_MODE
+        )
+
+    def test_live_contamination_marker_blocks_restart(self):
+        marker = runtime_recovery_guard.build_contamination_record(
+            reason_class=runtime_recovery_guard.REASON_MANUAL_DAEMON_KILL,
+            command_redacted="pkill -f mcp_server.py",
+        )
+        result = self._assess(contamination_marker=marker)
+        self.assertFalse(result["allowed"])
+        self.assertEqual(
+            result["reason_code"], sanctioned_restart.DENY_CONTAMINATED_RUNTIME
+        )
+
+    def test_reconciler_cleared_marker_no_longer_blocks(self):
+        marker = runtime_recovery_guard.build_contamination_record(
+            reason_class=runtime_recovery_guard.REASON_MANUAL_DAEMON_KILL,
+            command_redacted="pkill -f mcp_server.py",
+        )
+        marker = dict(marker, cleared_by_reconciler=True)
+        result = self._assess(contamination_marker=marker)
+        self.assertTrue(result["allowed"])
+
+
+class TestExecutionNeverKills(unittest.TestCase):
+    """AC5: no path exposes or runs a raw process kill."""
+
+    def test_authorized_execution_defers_to_the_host_supervisor(self):
+        result = sanctioned_restart.execute_restart(
+            NAMESPACE,
+            principal=admin(),
+            confirmation=f"restart {NAMESPACE}",
+            env=READY_ENV,
+        )
+        self.assertTrue(result["allowed"])
+        self.assertFalse(result["success"])
+        self.assertFalse(result["process_kill_executed"])
+        self.assertEqual(
+            result["outcome"], sanctioned_restart.ALLOW_HOST_ACTION_REQUIRED
+        )
+
+    def test_denied_execution_reports_the_refusing_gate(self):
+        result = sanctioned_restart.execute_restart(
+            NAMESPACE, principal=viewer(), confirmation=f"restart {NAMESPACE}",
+            env=READY_ENV,
+        )
+        self.assertFalse(result["allowed"])
+        self.assertEqual(
+            result["outcome"], sanctioned_restart.DENY_UNAUTHORIZED
+        )
+        self.assertFalse(result["process_kill_executed"])
+
+    def test_module_never_spawns_a_process(self):
+        path = os.path.join(
+            os.path.dirname(os.path.dirname(os.path.abspath(__file__))),
+            "webui", "sanctioned_restart.py",
+        )
+        with open(path, encoding="utf-8") as handle:
+            source = handle.read()
+        for forbidden in (
+            "import subprocess", "import signal", "os.kill", "os.system",
+            "popen",
+        ):
+            with self.subTest(forbidden=forbidden):
+                self.assertNotIn(forbidden, source.lower())
+
+    def test_no_surface_returns_a_kill_command(self):
+        payloads = [
+            sanctioned_restart.build_restart_preview(
+                NAMESPACE, principal=admin(), env=READY_ENV
+            ),
+            sanctioned_restart.restart_policy(),
+            sanctioned_restart.execute_restart(
+                NAMESPACE, principal=admin(),
+                confirmation=f"restart {NAMESPACE}", env=READY_ENV,
+            ),
+        ]
+        for payload in payloads:
+            rendered = json.dumps(payload, default=str).lower()
+            self.assertNotIn("kill -9", rendered)
+            self.assertNotIn("pkill -f", rendered)
+
+    def test_policy_declares_no_raw_kill_and_no_silent_restart(self):
+        policy = sanctioned_restart.restart_policy()
+        self.assertFalse(policy["raw_kill_exposed"])
+        self.assertFalse(policy["console_executes_process_kill"])
+        self.assertFalse(policy["fleet_scope_permitted"])
+        self.assertFalse(policy["silent_auto_restart_permitted"])
+        self.assertTrue(policy["audit_required"])
+
+
+class TestContaminationClassification(unittest.TestCase):
+    """AC2: manual pkill is contamination, and it blocks clean claims."""
+
+    def test_manual_daemon_pkill_is_contamination(self):
+        result = sanctioned_restart.classify_restart_command(
+            "pkill -f mcp_server.py"
+        )
+        self.assertTrue(result["contamination"])
+        self.assertFalse(result["clean_claim_allowed"])
+        self.assertIsNotNone(result["contamination_marker"])
+        self.assertEqual(
+            result["sanctioned_alternative"],
+            sanctioned_restart.ACTION_RESTART_NAMESPACE,
+        )
+
+    def test_broad_process_kill_is_contamination(self):
+        result = sanctioned_restart.classify_restart_command("killall -9 Python")
+        self.assertTrue(result["contamination"])
+        self.assertFalse(result["clean_claim_allowed"])
+
+    def test_marker_names_the_sanctioned_alternative(self):
+        result = sanctioned_restart.classify_restart_command(
+            "pkill -f mcp_server.py"
+        )
+        marker = result["contamination_marker"]
+        self.assertIn(
+            sanctioned_restart.ACTION_RESTART_NAMESPACE, marker["detail"]
+        )
+
+    def test_benign_command_is_not_contamination(self):
+        result = sanctioned_restart.classify_restart_command("git status")
+        self.assertFalse(result["contamination"])
+        self.assertTrue(result["clean_claim_allowed"])
+
+    def test_no_command_is_not_contamination(self):
+        result = sanctioned_restart.classify_restart_command(None)
+        self.assertFalse(result["contamination"])
+        self.assertTrue(result["clean_claim_allowed"])
+
+
+class TestPostRestartHealth(unittest.TestCase):
+    """AC3: a clean post-restart claim needs live client-namespace proof."""
+
+    def test_live_client_probe_clears_the_session(self):
+        result = sanctioned_restart.verify_post_restart_health(
+            NAMESPACE,
+            probe_result={"success": True},
+            probe_source=mcp_namespace_health.PROBE_SOURCE_CLIENT,
+            registered_tools=["gitea_whoami"],
+            required_tool="gitea_whoami",
+        )
+        self.assertEqual(result["status"], sanctioned_restart.HEALTH_CLEAN)
+        self.assertTrue(result["clean_claim_allowed"])
+        self.assertTrue(result["mutations_allowed"])
+
+    def test_offline_probe_does_not_clear_the_session(self):
+        result = sanctioned_restart.verify_post_restart_health(
+            NAMESPACE,
+            probe_result={"success": True},
+            probe_source=mcp_namespace_health.PROBE_SOURCE_OFFLINE,
+            registered_tools=["gitea_whoami"],
+            required_tool="gitea_whoami",
+        )
+        self.assertFalse(result["clean_claim_allowed"])
+        self.assertFalse(result["mutations_allowed"])
+
+    def test_failed_probe_is_unhealthy(self):
+        result = sanctioned_restart.verify_post_restart_health(
+            NAMESPACE,
+            probe_result={"success": False, "error": "client is closing: EOF"},
+            probe_source=mcp_namespace_health.PROBE_SOURCE_CLIENT,
+            registered_tools=["gitea_whoami"],
+            required_tool="gitea_whoami",
+        )
+        self.assertEqual(result["status"], sanctioned_restart.HEALTH_UNHEALTHY)
+        self.assertFalse(result["clean_claim_allowed"])
+
+    def test_static_registration_alone_never_clears_the_session(self):
+        result = sanctioned_restart.verify_post_restart_health(
+            NAMESPACE,
+            registered_tools=["gitea_whoami"],
+            required_tool="gitea_whoami",
+        )
+        self.assertFalse(result["clean_claim_allowed"])
+
+
+class TestAuditEmission(unittest.TestCase):
+    """Every restart attempt is audited with actor, target, and result."""
+
+    def _run(self, principal, sink):
+        prior = os.environ.get(console_audit.AUDIT_LOG_ENV)
+        os.environ[console_audit.AUDIT_LOG_ENV] = sink
+        try:
+            return sanctioned_restart.execute_restart(
+                NAMESPACE,
+                principal=principal,
+                confirmation=f"restart {NAMESPACE}",
+                env=READY_ENV,
+                request_id="req-642",
+            )
+        finally:
+            if prior is None:
+                os.environ.pop(console_audit.AUDIT_LOG_ENV, None)
+            else:
+                os.environ[console_audit.AUDIT_LOG_ENV] = prior
+
+    def test_allowed_attempt_is_written_with_actor_and_target(self):
+        with tempfile.TemporaryDirectory() as tmp:
+            sink = os.path.join(tmp, "audit.jsonl")
+            result = self._run(admin(), sink)
+            self.assertTrue(result["audit"]["written"])
+            with open(sink, encoding="utf-8") as handle:
+                record = json.loads(handle.read().strip())
+        self.assertEqual(
+            record["action"], sanctioned_restart.ACTION_RESTART_NAMESPACE
+        )
+        self.assertEqual(record["target"]["namespace"], NAMESPACE)
+        self.assertEqual(record["target"]["mode"], "restart")
+        self.assertEqual(record["result"], console_audit.RESULT_ALLOWED)
+        self.assertEqual(record["actor"]["subject"], "[email protected]")
+        self.assertFalse(record["metadata"]["process_kill_executed"])
+
+    def test_denied_attempt_is_audited_too(self):
+        with tempfile.TemporaryDirectory() as tmp:
+            sink = os.path.join(tmp, "audit.jsonl")
+            self._run(viewer(), sink)
+            with open(sink, encoding="utf-8") as handle:
+                record = json.loads(handle.read().strip())
+        self.assertEqual(record["result"], console_audit.RESULT_DENIED)
+        self.assertEqual(
+            record["reason_code"], sanctioned_restart.DENY_UNAUTHORIZED
+        )
+
+    def test_restart_audit_uses_break_glass_retention(self):
+        action = console_authz.get_action(
+            sanctioned_restart.ACTION_RESTART_NAMESPACE
+        )
+        self.assertEqual(
+            console_audit.retention_class_for(action),
+            console_audit.RETENTION_BREAK_GLASS,
+        )
+
+
+class TestRegistrySurface(unittest.TestCase):
+    """AC5: the console surfaces the control, still disabled, with no kill."""
+
+    def test_registry_exposes_both_actions_disabled(self):
+        registry = gated_actions.load_action_registry()
+        for action_id in (
+            sanctioned_restart.ACTION_RESTART_NAMESPACE,
+            sanctioned_restart.ACTION_RELOAD_NAMESPACE,
+        ):
+            with self.subTest(action=action_id):
+                action = registry.get(action_id)
+                self.assertIsNotNone(action)
+                self.assertFalse(action.enabled)
+
+    def test_registry_preview_names_the_namespace_target(self):
+        preview = gated_actions.preview_action(
+            sanctioned_restart.ACTION_RESTART_NAMESPACE, namespace=NAMESPACE
+        )
+        target = preview["mutation_ledger"][0]["target"]
+        self.assertIn(NAMESPACE, target)
+        self.assertFalse(preview["enabled"])
+
+    def test_registry_attempt_fails_closed(self):
+        result = gated_actions.attempt_action(
+            sanctioned_restart.ACTION_RESTART_NAMESPACE, namespace=NAMESPACE
+        )
+        self.assertFalse(result["success"])
+
+
+if __name__ == "__main__":
+    unittest.main()

tests/test_worktree_cleanup_audit.py

@@ -134,13 +134,35 @@ class TestClassification(unittest.TestCase):
         self.assertEqual(cls, wca.CLASS_ACTIVE_OPEN_PR)
         self.assertFalse(wca.is_removable(cls))
 
-    def test_stale_clean_issue_worktree_removable(self):
-        # Scenario 5: clean issue worktree, TTL expired, no lock -> removable.
+    def test_stale_clean_issue_worktree_needs_merged_pr_proof(self):
+        # Scenario 5 (#858): age is not proof that the branch landed, so a
+        # TTL-expired issue worktree stays active work. Only authoritative
+        # merged-PR evidence makes it removable, which is what keeps a
+        # worktree holding unmerged commits from being reclaimed by age.
         cls = wca.classify_worktree(
             workflow_type=wca.WORKFLOW_ISSUE_WORK,
             is_dirty=False,
             ttl_expired=True,
         )
+        self.assertEqual(cls, wca.CLASS_ACTIVE_ISSUE_WORK)
+        self.assertFalse(wca.is_removable(cls))
+
+        cls = wca.classify_worktree(
+            workflow_type=wca.WORKFLOW_ISSUE_WORK,
+            is_dirty=False,
+            ttl_expired=True,
+            merged_pr_cleanup={"proven": True},
+        )
+        self.assertEqual(cls, wca.CLASS_CLEAN_STALE_REMOVABLE)
+        self.assertTrue(wca.is_removable(cls))
+
+    def test_stale_clean_conflict_fix_worktree_removable(self):
+        # conflict_fix keeps the original TTL rule; #858 changed issue work only.
+        cls = wca.classify_worktree(
+            workflow_type=wca.WORKFLOW_CONFLICT_FIX,
+            is_dirty=False,
+            ttl_expired=True,
+        )
         self.assertEqual(cls, wca.CLASS_CLEAN_STALE_REMOVABLE)
         self.assertTrue(wca.is_removable(cls))
 

webui/console_authz.py

@@ -236,6 +236,34 @@ _ACTION_SPECS: tuple[ConsoleAction, ...] = (
         phase=3,
         summary="Remove a remote feature branch.",
     ),
+    # #642: sanctioned daemon lifecycle. These exist so operators have an
+    # audited path off `pkill -f mcp_server.py` (#630). Restart drops every
+    # in-flight request on a namespace, so it carries the same dual-control and
+    # break-glass weight as a merge; reload drains first and is privileged but
+    # not destructive. Neither ever exposes a raw kill: execution is handed to
+    # a host supervisor by ``webui.sanctioned_restart``.
+    ConsoleAction(
+        action_id="system.reload_namespace",
+        task_key="reload_namespace",
+        action_class=CLASS_PRIVILEGED,
+        minimum_role=CONTROLLER,
+        requires_confirmation=True,
+        dual_control=False,
+        break_glass=False,
+        phase=2,
+        summary="Gracefully reload one MCP namespace via the host supervisor.",
+    ),
+    ConsoleAction(
+        action_id="system.restart_namespace",
+        task_key="restart_namespace",
+        action_class=CLASS_DESTRUCTIVE,
+        minimum_role=ADMIN,
+        requires_confirmation=True,
+        dual_control=True,
+        break_glass=True,
+        phase=2,
+        summary="Restart one MCP namespace via the host supervisor.",
+    ),
 )
 
 ACTIONS: dict[str, ConsoleAction] = {a.action_id: a for a in _ACTION_SPECS}

webui/gated_actions.py

@@ -110,6 +110,8 @@ def _format_target(action_id: str, params: dict[str, Any]) -> str:
         )
     if action_id == "create_issue":
         return f"issue {params.get('title', '?')!r}"
+    if action_id in {"system.restart_namespace", "system.reload_namespace"}:
+        return f"MCP namespace {params.get('namespace', '?')!r}"
     return "unspecified"
 
 
@@ -165,6 +167,17 @@ def build_action_registry() -> ActionRegistry:
          "gitea_create_issue_comment", "Post a PR review thread comment."),
         ("close_pr", "Close PR", "close_pr", "gitea_edit_pr",
          "Close a pull request without merge."),
+        # #642: the sanctioned replacement for the forbidden manual daemon-kill
+        # recovery path (#630). The "tool" is a host supervisor hook, not an MCP
+        # call — the console never signals a process. Preview and gating live in
+        # ``webui.sanctioned_restart``; these stay disabled like every other
+        # registry entry.
+        ("system.reload_namespace", "Reload MCP namespace", "reload_namespace",
+         "host.supervisor_reload",
+         "Gracefully reload one MCP namespace via the host supervisor."),
+        ("system.restart_namespace", "Restart MCP namespace",
+         "restart_namespace", "host.supervisor_restart",
+         "Restart one MCP namespace via the host supervisor."),
     )
     actions = tuple(
         GatedAction(

webui/sanctioned_restart.py

@@ -0,0 +1,613 @@
+"""Sanctioned MCP restart and graceful reload controls (#642, Phase 2).
+
+Sessions have historically recovered MCP connectivity by killing the host
+daemon (``pkill -f mcp_server.py``, #630). That path stays forbidden: it kills
+every namespace on the host, contaminates the surviving session, and leaves no
+audit trail. This module is the sanctioned replacement.
+
+A restart is modelled as a *gated action*, never as a command:
+
+1. **Capability** — the console action resolves through ``console_authz``
+   against ``task_capability_map``, so the console cannot invent an authority
+   the MCP layer does not already define.
+2. **Preview** — :func:`build_restart_preview` renders a mutation ledger and
+   the exact confirmation phrase. It never returns a shell command.
+3. **Confirmation** — the operator echoes a phrase naming the exact namespace
+   and mode. A phrase for one namespace never authorizes another.
+4. **Operator authorization** — host daemon maintenance is authorized out of
+   band through the environment (#630, and #710 finding F1: a worker session
+   cannot set an env var for an already-running daemon, so this cannot be
+   self-asserted the way a tool argument could).
+5. **Execution** — :func:`execute_restart` never spawns a process. Once every
+   gate passes it hands the request to the configured host-managed restart
+   hook; with no hook configured it fails closed.
+6. **Health recheck** — :func:`verify_post_restart_health` requires live
+   client-namespace probe evidence before any post-restart clean claim.
+
+Manual ``pkill`` remains forbidden and is classified as contamination by
+:func:`classify_restart_command`, which blocks clean claims (#630 AC3).
+
+This module performs no I/O beyond reading its own environment configuration,
+imports no MCP client, and holds no credential.
+"""
+
+from __future__ import annotations
+
+import os
+from dataclasses import asdict, dataclass
+from typing import Any
+
+import mcp_namespace_health
+import runtime_recovery_guard
+from webui import console_audit, console_authz
+
+# --- Operations -------------------------------------------------------------
+
+MODE_RESTART = "restart"
+MODE_RELOAD = "reload"
+MODES: tuple[str, ...] = (MODE_RESTART, MODE_RELOAD)
+
+ACTION_RESTART_NAMESPACE = "system.restart_namespace"
+ACTION_RELOAD_NAMESPACE = "system.reload_namespace"
+
+ACTION_FOR_MODE: dict[str, str] = {
+    MODE_RESTART: ACTION_RESTART_NAMESPACE,
+    MODE_RELOAD: ACTION_RELOAD_NAMESPACE,
+}
+
+# Namespaces the console may target. An unlisted name fails closed rather than
+# being passed through to a host hook.
+KNOWN_NAMESPACES: tuple[str, ...] = tuple(
+    sorted(
+        set(mcp_namespace_health.DEFAULT_NAMESPACES)
+        | {"gitea-author", "gitea-reviewer", "gitea-merger",
+           "gitea-reconciler", "gitea-controller"}
+    )
+)
+
+# Scope tokens that would mean "everything at once". Explicit non-goal: the
+# console never offers a fleet-wide restart, because that is the blast radius
+# `pkill -f mcp_server.py` already had.
+_FLEET_TOKENS = frozenset({"*", "all", "fleet", "any", ""})
+
+# --- Environment configuration ----------------------------------------------
+# Read server-side only; the value is an opaque host hook reference (e.g. a
+# launchd label), never a command line, and is never rendered to a client.
+RESTART_HOOK_ENV = "GITEA_SANCTIONED_RESTART_HOOK"
+
+# --- Reason codes -----------------------------------------------------------
+
+DENY_UNKNOWN_MODE = "unknown_mode"
+DENY_UNKNOWN_NAMESPACE = "unknown_namespace"
+DENY_FLEET_SCOPE = "fleet_scope_not_permitted"
+DENY_UNAUTHORIZED = "unauthorized"
+DENY_CONFIRMATION_MISSING = "confirmation_required"
+DENY_CONFIRMATION_MISMATCH = "confirmation_mismatch"
+DENY_OPERATOR_AUTHORIZATION = "operator_authorization_missing"
+DENY_HOOK_NOT_CONFIGURED = "restart_hook_not_configured"
+DENY_CONTAMINATED_RUNTIME = "contaminated_runtime"
+
+ALLOW_HOST_ACTION_REQUIRED = "host_action_required"
+
+# Post-restart verification outcomes.
+HEALTH_CLEAN = "clean"
+HEALTH_UNPROVEN = "unproven"
+HEALTH_UNHEALTHY = "unhealthy"
+
+
+def _clean(value: Any) -> str:
+    return str(value or "").strip()
+
+
+# --- Mutation ledger --------------------------------------------------------
+
+
+@dataclass(frozen=True)
+class RestartLedgerEntry:
+    """One planned step, shown before anything is asked of the host."""
+
+    sequence: int
+    step: str
+    summary: str
+    executes_process_kill: bool = False
+
+
+def _mutation_ledger(namespace: str, mode: str) -> tuple[RestartLedgerEntry, ...]:
+    if mode == MODE_RELOAD:
+        middle = RestartLedgerEntry(
+            sequence=2,
+            step="host_graceful_reload",
+            summary=(
+                f"Ask the configured host supervisor to reload {namespace} "
+                "in place, draining in-flight requests. The console does not "
+                "signal the process itself."
+            ),
+        )
+    else:
+        middle = RestartLedgerEntry(
+            sequence=2,
+            step="host_restart_hook",
+            summary=(
+                f"Ask the configured host supervisor to restart {namespace}. "
+                "The console never sends a signal and never runs a kill."
+            ),
+        )
+    return (
+        RestartLedgerEntry(
+            sequence=1,
+            step="quiesce",
+            summary=(
+                f"Stop admitting new gated mutations for {namespace} and "
+                "record the intent before anything restarts."
+            ),
+        ),
+        middle,
+        RestartLedgerEntry(
+            sequence=3,
+            step="health_recheck",
+            summary=(
+                f"Re-probe {namespace} through the live client namespace and "
+                "prove the required tool is callable again."
+            ),
+        ),
+        RestartLedgerEntry(
+            sequence=4,
+            step="audit",
+            summary=(
+                "Append actor, target namespace, mode, and result to the "
+                "console audit log."
+            ),
+        ),
+    )
+
+
+# --- Confirmation -----------------------------------------------------------
+
+
+def confirmation_phrase(namespace: str, mode: str) -> str:
+    """Exact phrase an operator must echo, naming the namespace and mode.
+
+    Binding the namespace into the phrase is the point: a confirmation typed
+    for ``gitea-author`` cannot be replayed against ``gitea-merger``.
+    """
+    return f"{_clean(mode)} {_clean(namespace)}"
+
+
+def confirmation_matches(
+    namespace: str, mode: str, confirmation: str | None
+) -> bool:
+    """Compare *confirmation* to the required phrase (exact, whitespace-trimmed)."""
+    return _clean(confirmation) == confirmation_phrase(namespace, mode)
+
+
+# --- Scope validation -------------------------------------------------------
+
+
+def _validate_scope(namespace: str, mode: str) -> tuple[str, str] | None:
+    """Return ``(reason_code, detail)`` when the scope is refused."""
+    ns = _clean(namespace)
+    md = _clean(mode)
+
+    if md not in MODES:
+        return (
+            DENY_UNKNOWN_MODE,
+            f"Mode {md!r} is not one of {', '.join(MODES)}.",
+        )
+    if ns.lower() in _FLEET_TOKENS:
+        return (
+            DENY_FLEET_SCOPE,
+            (
+                "Fleet-wide restart is an explicit non-goal: it reproduces the "
+                "blast radius of `pkill -f mcp_server.py` (#630). Restart one "
+                "namespace at a time."
+            ),
+        )
+    if ns not in KNOWN_NAMESPACES:
+        return (
+            DENY_UNKNOWN_NAMESPACE,
+            f"Namespace {ns!r} is not a known MCP namespace.",
+        )
+    return None
+
+
+# --- Host hook --------------------------------------------------------------
+
+
+def restart_hook(env: dict[str, str] | None = None) -> dict[str, Any]:
+    """Report the configured host-managed restart hook.
+
+    The hook is a reference the *host* resolves (a supervisor label), not a
+    command this process runs. ``configured=False`` fails restart closed.
+    """
+    source = env if env is not None else os.environ
+    reference = _clean(source.get(RESTART_HOOK_ENV))
+    return {
+        "configured": bool(reference),
+        "reference": reference or None,
+        "source": RESTART_HOOK_ENV if reference else None,
+        "self_assertable": False,
+        "console_executes_process": False,
+    }
+
+
+# --- Preview ----------------------------------------------------------------
+
+
+def build_restart_preview(
+    namespace: str,
+    mode: str = MODE_RESTART,
+    *,
+    principal: console_authz.Principal | None = None,
+    env: dict[str, str] | None = None,
+) -> dict[str, Any]:
+    """Render the dry-run preview for a restart/reload request.
+
+    Read-only: no authorization is granted, no host is contacted, and the
+    result never contains a shell command.
+    """
+    ns = _clean(namespace)
+    md = _clean(mode)
+    action_id = ACTION_FOR_MODE.get(md, ACTION_RESTART_NAMESPACE)
+    action = console_authz.get_action(action_id)
+    decision = console_authz.authorize(action_id, principal)
+    scope_error = _validate_scope(ns, md)
+    hook = restart_hook(env)
+    operator = runtime_recovery_guard.operator_authorization(env)
+
+    return {
+        "action_id": action_id,
+        "namespace": ns,
+        "mode": md,
+        "scope_valid": scope_error is None,
+        "scope_reason_code": scope_error[0] if scope_error else None,
+        "scope_detail": scope_error[1] if scope_error else None,
+        "required_role": action.minimum_role if action else None,
+        "required_permission": action.mcp_permission if action else None,
+        "action_class": action.action_class if action else None,
+        "dual_control": action.dual_control if action else True,
+        "break_glass": action.break_glass if action else True,
+        "requires_confirmation": True,
+        "confirmation_phrase": confirmation_phrase(ns, md),
+        "mutation_ledger": [asdict(entry) for entry in _mutation_ledger(ns, md)],
+        "authorization": decision.to_dict(),
+        "operator_authorization": operator,
+        "restart_hook": hook,
+        "execution_enabled": False,
+        "raw_process_kill_exposed": False,
+        "known_namespaces": list(KNOWN_NAMESPACES),
+        "post_restart_verification_required": True,
+    }
+
+
+# --- Gate -------------------------------------------------------------------
+
+
+def assess_restart_request(
+    namespace: str,
+    mode: str = MODE_RESTART,
+    *,
+    principal: console_authz.Principal | None = None,
+    confirmation: str | None = None,
+    contamination_marker: dict[str, Any] | None = None,
+    env: dict[str, str] | None = None,
+) -> dict[str, Any]:
+    """Decide whether a restart request may proceed to the host hook.
+
+    Every gate must pass. The first failure wins and is reported with a stable
+    reason code; a pass never means "restarted", only "may be handed to the
+    configured host hook".
+    """
+    ns = _clean(namespace)
+    md = _clean(mode)
+    action_id = ACTION_FOR_MODE.get(md, ACTION_RESTART_NAMESPACE)
+    preview = build_restart_preview(ns, md, principal=principal, env=env)
+
+    def refuse(reason_code: str, detail: str) -> dict[str, Any]:
+        return {
+            "allowed": False,
+            "gates_passed": False,
+            "reason_code": reason_code,
+            "detail": detail,
+            "action_id": action_id,
+            "namespace": ns,
+            "mode": md,
+            "preview": preview,
+            "execution_enabled": False,
+        }
+
+    scope_error = _validate_scope(ns, md)
+    if scope_error is not None:
+        return refuse(*scope_error)
+
+    # Authority is checked as an authorization decision, not an execution
+    # grant. ``for_execution=True`` asks "may the console perform this write?",
+    # and the answer here is permanently no: step 2 of the ledger is a request
+    # to the host supervisor, so the console's Phase 2 execution gate is not
+    # the relevant gate. Every branch below keeps ``execution_enabled`` False
+    # and :func:`execute_restart` never touches a process.
+    decision = console_authz.authorize(action_id, principal)
+    if not decision.allowed:
+        return refuse(DENY_UNAUTHORIZED, decision.detail)
+
+    if not _clean(confirmation):
+        return refuse(
+            DENY_CONFIRMATION_MISSING,
+            (
+                "Type the confirmation phrase "
+                f"{preview['confirmation_phrase']!r} to proceed."
+            ),
+        )
+    if not confirmation_matches(ns, md, confirmation):
+        return refuse(
+            DENY_CONFIRMATION_MISMATCH,
+            (
+                "Confirmation does not name this namespace and mode; expected "
+                f"{preview['confirmation_phrase']!r}."
+            ),
+        )
+
+    operator = preview["operator_authorization"]
+    if not operator["authorized"]:
+        return refuse(
+            DENY_OPERATOR_AUTHORIZATION,
+            (
+                "Host daemon maintenance requires out-of-band operator "
+                "authorization via "
+                f"{runtime_recovery_guard.OPERATOR_AUTHORIZATION_ENV}."
+            ),
+        )
+
+    # #630's task-scoped gate deliberately lets a contaminated worker keep
+    # commenting and handing off. Restart is stricter and unconditional: a
+    # runtime already contaminated by a manual kill must be reconciled before
+    # it is restarted again, or the restart just launders the contamination.
+    if contamination_marker and not contamination_marker.get(
+        "cleared_by_reconciler"
+    ):
+        return refuse(
+            DENY_CONTAMINATED_RUNTIME,
+            (
+                "A live contamination marker is present; clear it through the "
+                "reconciler path before restarting."
+            ),
+        )
+
+    hook = preview["restart_hook"]
+    if not hook["configured"]:
+        return refuse(
+            DENY_HOOK_NOT_CONFIGURED,
+            (
+                "No host-managed restart hook is configured "
+                f"({RESTART_HOOK_ENV}). The console will not fall back to a "
+                "process kill."
+            ),
+        )
+
+    return {
+        "allowed": True,
+        "gates_passed": True,
+        "reason_code": ALLOW_HOST_ACTION_REQUIRED,
+        "detail": (
+            "Every gate passed. The restart must be performed by the "
+            "configured host supervisor; the console does not signal the "
+            "process."
+        ),
+        "action_id": action_id,
+        "namespace": ns,
+        "mode": md,
+        "preview": preview,
+        "execution_enabled": False,
+        "console_executes": False,
+        "console_active_phase": console_authz.ACTIVE_PHASE,
+    }
+
+
+# --- Execution --------------------------------------------------------------
+
+
+def execute_restart(
+    namespace: str,
+    mode: str = MODE_RESTART,
+    *,
+    principal: console_authz.Principal | None = None,
+    confirmation: str | None = None,
+    contamination_marker: dict[str, Any] | None = None,
+    env: dict[str, str] | None = None,
+    request_id: str | None = None,
+    session_id: str | None = None,
+) -> dict[str, Any]:
+    """Run every gate, audit the outcome, and hand off to the host.
+
+    This function never spawns a process, never sends a signal, and never
+    builds a command line. ``success`` is False in both directions: a refused
+    request is refused, and an authorized request still requires the host
+    supervisor to act.
+    """
+    assessment = assess_restart_request(
+        namespace,
+        mode,
+        principal=principal,
+        confirmation=confirmation,
+        contamination_marker=contamination_marker,
+        env=env,
+    )
+    action_id = assessment["action_id"]
+    allowed = assessment["allowed"]
+
+    audit = console_audit.record_event(
+        action_id=action_id,
+        result=(
+            console_audit.RESULT_ALLOWED if allowed
+            else console_audit.RESULT_DENIED
+        ),
+        principal=principal,
+        target={"namespace": assessment["namespace"], "mode": assessment["mode"]},
+        reason_code=assessment["reason_code"],
+        detail=assessment["detail"],
+        request_id=request_id,
+        session_id=session_id,
+        metadata={
+            "gates_passed": assessment["gates_passed"],
+            "process_kill_executed": False,
+            "post_restart_verification_required": True,
+        },
+    )
+
+    return {
+        "success": False,
+        "outcome": (
+            ALLOW_HOST_ACTION_REQUIRED if allowed else assessment["reason_code"]
+        ),
+        "allowed": allowed,
+        "detail": assessment["detail"],
+        "namespace": assessment["namespace"],
+        "mode": assessment["mode"],
+        "action_id": action_id,
+        "process_kill_executed": False,
+        "host_hook": assessment["preview"]["restart_hook"],
+        "next_action": (
+            "Have the host supervisor perform the restart, then call "
+            "verify_post_restart_health with live client-namespace evidence "
+            "before claiming a clean session."
+            if allowed
+            else assessment["detail"]
+        ),
+        "assessment": assessment,
+        "audit": audit,
+    }
+
+
+# --- Contamination classification -------------------------------------------
+
+
+def classify_restart_command(
+    command: str | None,
+    *,
+    mcp_pids: list[Any] | tuple[Any, ...] | None = None,
+    session_id: str | None = None,
+    remote: str | None = None,
+    role: str | None = None,
+) -> dict[str, Any]:
+    """Classify an operator-proposed recovery command (#630 AC2).
+
+    A manual ``pkill``/``kill`` of the MCP daemon is contamination, not a
+    restart. When contaminating, a durable marker is returned so downstream
+    gated mutations and clean claims fail closed.
+    """
+    classification = runtime_recovery_guard.classify_recovery_command(
+        command, mcp_pids=mcp_pids
+    )
+    contaminating = bool(classification.get("contamination"))
+
+    marker = None
+    if contaminating:
+        marker = runtime_recovery_guard.build_contamination_record(
+            reason_class=(
+                classification.get("reason_class")
+                or runtime_recovery_guard.REASON_MANUAL_DAEMON_KILL
+            ),
+            command_redacted=classification.get("redacted_command"),
+            session_id=session_id,
+            remote=remote,
+            role=role,
+            detail=(
+                "Manual daemon kill is forbidden; use the sanctioned "
+                f"{ACTION_RESTART_NAMESPACE} gated action instead."
+            ),
+        )
+
+    return {
+        "contamination": contaminating,
+        "sanctioned": not contaminating and not classification.get("process_kill"),
+        "clean_claim_allowed": not contaminating,
+        "reason_class": classification.get("reason_class"),
+        "redacted_command": classification.get("redacted_command"),
+        "classification": classification,
+        "contamination_marker": marker,
+        "sanctioned_alternative": ACTION_RESTART_NAMESPACE,
+    }
+
+
+# --- Post-restart health verification ---------------------------------------
+
+
+def verify_post_restart_health(
+    namespace: str,
+    *,
+    probe_result: dict[str, Any] | None = None,
+    probe_source: str | None = None,
+    registered_tools: list[str] | tuple[str, ...] | None = None,
+    required_tool: str | None = None,
+    profile: str | None = None,
+) -> dict[str, Any]:
+    """Require live proof a namespace is callable before any clean claim (AC3).
+
+    Static registration is not proof and neither is an offline subprocess
+    probe: only ``probe_source=client_namespace`` evidence can clear a
+    post-restart session for mutations.
+    """
+    ns = _clean(namespace)
+    health = mcp_namespace_health.classify_namespace_probe(
+        ns,
+        required_tool=required_tool,
+        registered_tools=registered_tools,
+        probe_result=probe_result,
+        profile=profile,
+        probe_source=probe_source,
+    )
+    healthy = bool(health.get("healthy"))
+    proven = bool(health.get("ide_namespace_proven"))
+
+    if healthy and proven:
+        status = HEALTH_CLEAN
+    elif healthy:
+        status = HEALTH_UNPROVEN
+    else:
+        status = HEALTH_UNHEALTHY
+
+    reasons = list(health.get("reasons") or [])
+    if status == HEALTH_UNPROVEN:
+        reasons.append(
+            "Namespace reported healthy without live client-namespace "
+            "evidence; a post-restart clean claim requires "
+            f"probe_source={mcp_namespace_health.PROBE_SOURCE_CLIENT!r}."
+        )
+
+    return {
+        "namespace": ns,
+        "status": status,
+        "healthy": healthy,
+        "ide_namespace_proven": proven,
+        "clean_claim_allowed": status == HEALTH_CLEAN,
+        "mutations_allowed": status == HEALTH_CLEAN,
+        "reasons": reasons,
+        "health": health,
+    }
+
+
+# --- Policy surface ---------------------------------------------------------
+
+
+def restart_policy() -> dict[str, Any]:
+    """Machine-readable description of the sanctioned restart contract."""
+    return {
+        "policy_version": 1,
+        "modes": list(MODES),
+        "actions": [ACTION_RESTART_NAMESPACE, ACTION_RELOAD_NAMESPACE],
+        "known_namespaces": list(KNOWN_NAMESPACES),
+        "fleet_scope_permitted": False,
+        "console_executes_process_kill": False,
+        "raw_kill_exposed": False,
+        "requires_confirmation": True,
+        "confirmation_binds_namespace": True,
+        "operator_authorization_env": (
+            runtime_recovery_guard.OPERATOR_AUTHORIZATION_ENV
+        ),
+        "restart_hook_env": RESTART_HOOK_ENV,
+        "manual_kill_classified_as": runtime_recovery_guard.CONTAMINATION_KIND,
+        "post_restart_clean_claim_requires": (
+            mcp_namespace_health.PROBE_SOURCE_CLIENT
+        ),
+        "audit_required": True,
+        "silent_auto_restart_permitted": False,
+    }

worktree_cleanup_audit.py

@@ -34,7 +34,11 @@ import subprocess
 from datetime import datetime, timezone
 from typing import Any
 
-from merged_cleanup_reconcile import branch_worktree_folder, read_local_worktree_state
+from merged_cleanup_reconcile import (
+    branch_worktree_folder,
+    is_head_ancestor_of_ref,
+    read_local_worktree_state,
+)
 from reviewer_worktree import parse_dirty_tracked_files, REVIEW_WORKTREE_RE
 
 PROTECTED_BRANCHES = frozenset({"master", "main", "dev"})
@@ -67,6 +71,14 @@ REMOVABLE_CLASSES = frozenset(
     {CLASS_CLEAN_STALE_REMOVABLE, CLASS_DETACHED_REVIEW_LEFTOVER}
 )
 
+# Merged-PR linkage outcomes for issue worktrees (#858). Only ``LINKAGE_MERGED``
+# is ownership proof; every other outcome leaves the worktree protected.
+LINKAGE_MERGED = "merged_pr"
+LINKAGE_OPEN = "open_pr"
+LINKAGE_NONE = "no_owning_pr"
+LINKAGE_AMBIGUOUS = "ambiguous"
+LINKAGE_UNKNOWN = "unknown"
+
 _ISSUE_REF_RE = re.compile(r"issue-(\d+)", re.IGNORECASE)
 _ISSUE_BRANCH_PREFIXES = ("feat/", "fix/", "docs/", "chore/")
 
@@ -169,6 +181,186 @@ def is_ttl_expired(
     return (now_dt - last).total_seconds() > ttl_hours * 3600.0
 
 
+def build_pr_index(prs: list[dict[str, Any]] | None) -> dict[str, list[dict[str, Any]]]:
+    """Index PR records by head branch for deterministic worktree linkage (#858).
+
+    Accepts Gitea PR payloads (``head`` as a dict) and pre-flattened records
+    (``head_branch``/``head_sha``). Records without a usable head branch or
+    number are dropped rather than guessed at, so a branch is only ever linked
+    to a PR the caller actually proved.
+    """
+    index: dict[str, list[dict[str, Any]]] = {}
+    for pr in prs or []:
+        head = pr.get("head")
+        if isinstance(head, dict):
+            head_branch = head.get("ref")
+            head_sha = head.get("sha")
+        else:
+            head_branch = pr.get("head_branch") or (head if isinstance(head, str) else None)
+            head_sha = pr.get("head_sha")
+        number = pr.get("number")
+        if not head_branch or number is None:
+            continue
+        try:
+            pr_number = int(number)
+        except (TypeError, ValueError):
+            continue
+        index.setdefault(str(head_branch).strip(), []).append(
+            {
+                "pr_number": pr_number,
+                "head_branch": str(head_branch).strip(),
+                "head_sha": head_sha,
+                "merged": bool(pr.get("merged") or pr.get("merged_at")),
+                "state": pr.get("state"),
+            }
+        )
+    return index
+
+
+def resolve_owning_pr(
+    *,
+    branch: str | None,
+    pr_index: dict[str, list[dict[str, Any]]] | None,
+) -> dict[str, Any]:
+    """Resolve the single PR that owns ``branch``, failing closed when unclear.
+
+    Ownership is only ``LINKAGE_MERGED`` when exactly one PR claims the branch
+    and that PR is merged. Several distinct PRs on one branch is a competing
+    claim (``LINKAGE_AMBIGUOUS``), and a still-open owner is reported as
+    ``LINKAGE_OPEN`` — both keep the worktree protected while still exposing
+    the PR number the audit resolved.
+    """
+    if pr_index is None:
+        return {
+            "status": LINKAGE_UNKNOWN,
+            "pr_number": None,
+            "candidate_pr_numbers": [],
+            "reasons": ["live PR state was not supplied; ownership unproven"],
+        }
+    branch_name = (branch or "").strip()
+    if not branch_name:
+        return {
+            "status": LINKAGE_UNKNOWN,
+            "pr_number": None,
+            "candidate_pr_numbers": [],
+            "reasons": ["worktree has no attached branch; ownership unproven"],
+        }
+
+    candidates = list(pr_index.get(branch_name) or [])
+    numbers = sorted({c["pr_number"] for c in candidates})
+    if not candidates:
+        return {
+            "status": LINKAGE_NONE,
+            "pr_number": None,
+            "candidate_pr_numbers": [],
+            "reasons": [f"no PR claims branch '{branch_name}'"],
+        }
+    if len(numbers) > 1:
+        return {
+            "status": LINKAGE_AMBIGUOUS,
+            "pr_number": None,
+            "candidate_pr_numbers": numbers,
+            "reasons": [
+                f"branch '{branch_name}' is claimed by competing PRs {numbers}; "
+                "ownership is ambiguous"
+            ],
+        }
+
+    owner = candidates[0]
+    pr_number = owner["pr_number"]
+    if owner.get("head_branch") != branch_name:
+        return {
+            "status": LINKAGE_UNKNOWN,
+            "pr_number": pr_number,
+            "candidate_pr_numbers": numbers,
+            "reasons": [
+                f"PR #{pr_number} head branch '{owner.get('head_branch')}' does not "
+                f"match worktree branch '{branch_name}'"
+            ],
+        }
+    if not owner.get("merged"):
+        return {
+            "status": LINKAGE_OPEN,
+            "pr_number": pr_number,
+            "candidate_pr_numbers": numbers,
+            "pr_head_sha": owner.get("head_sha"),
+            "reasons": [f"owning PR #{pr_number} is not merged"],
+        }
+    return {
+        "status": LINKAGE_MERGED,
+        "pr_number": pr_number,
+        "candidate_pr_numbers": numbers,
+        "pr_head_sha": owner.get("head_sha"),
+        "reasons": [],
+    }
+
+
+def assess_merged_pr_worktree_cleanup(
+    *,
+    linkage: dict[str, Any] | None,
+    head_sha: str | None,
+    head_in_master: bool | None,
+    is_dirty: bool,
+    has_open_pr: bool,
+    has_active_lease: bool,
+    has_active_issue_lock: bool,
+    is_protected: bool,
+    has_live_session: bool = False,
+) -> dict[str, Any]:
+    """Decide whether a merged issue worktree satisfies the full cleanup policy.
+
+    Every condition must be independently proven: conclusive merged-PR
+    ownership, agreement between the worktree branch and the PR head branch,
+    containment of the worktree head in authoritative master (which is what
+    proves no unmerged commits remain), absence of any open/competing PR,
+    lease, issue lock, or live session, a clean tree, and a worktree that is
+    not the protected control checkout. Anything unknown blocks.
+    """
+    link = linkage or {
+        "status": LINKAGE_UNKNOWN,
+        "pr_number": None,
+        "reasons": ["no linkage assessment supplied"],
+    }
+    status = link.get("status")
+    reasons: list[str] = []
+
+    if status != LINKAGE_MERGED:
+        reasons.extend(
+            link.get("reasons") or ["owning PR could not be conclusively identified"]
+        )
+    if is_protected:
+        reasons.append("worktree is protected or the stable control checkout")
+    if is_dirty:
+        reasons.append("worktree has uncommitted changes")
+    if has_open_pr:
+        reasons.append("worktree branch has an open PR")
+    if has_active_lease:
+        reasons.append("worktree has an active lease")
+    if has_active_issue_lock:
+        reasons.append("an active issue lock references this branch")
+    if has_live_session:
+        reasons.append("a live process or session is using this worktree")
+    if not head_sha:
+        reasons.append("worktree head sha is unknown")
+    if head_in_master is None:
+        reasons.append("containment of the worktree head in master is unknown")
+    elif not head_in_master:
+        reasons.append(
+            "worktree head is not contained in authoritative master "
+            "(unmerged commits remain)"
+        )
+
+    proven = not reasons
+    return {
+        "linkage_status": status,
+        "pr_number": link.get("pr_number"),
+        "pr_head_sha": link.get("pr_head_sha"),
+        "head_in_master": head_in_master,
+        "proven": proven,
+        "block_reasons": reasons,
+    }
+
+
 def classify_worktree(
     *,
     workflow_type: str,
@@ -181,6 +373,8 @@ def classify_worktree(
     ttl_expired: bool = False,
     is_protected: bool = False,
     metadata_known: bool = True,
+    merged_pr_cleanup: dict[str, Any] | None = None,
+    has_live_session: bool = False,
 ) -> str:
     """Classify a worktree, safety-first: any preservation signal wins.
 
@@ -199,6 +393,8 @@ def classify_worktree(
         return CLASS_ACTIVE_ISSUE_WORK  # never auto-deleted (criterion 8)
     if has_active_issue_lock:
         return CLASS_ACTIVE_ISSUE_WORK
+    if has_live_session:
+        return CLASS_ACTIVE_ISSUE_WORK  # a live session still owns this tree
     if not metadata_known or workflow_type == WORKFLOW_UNKNOWN:
         return CLASS_UNSAFE_UNKNOWN  # never auto-deleted without proof
 
@@ -207,7 +403,15 @@ def classify_worktree(
         if is_detached or branch_gone:
             return CLASS_DETACHED_REVIEW_LEFTOVER
         return CLASS_CLEAN_STALE_REMOVABLE
-    # issue_work / conflict_fix: only removable once the TTL has expired.
+    if workflow_type == WORKFLOW_ISSUE_WORK:
+        # #858: an issue worktree becomes removable only on authoritative
+        # merged-PR evidence satisfying the whole cleanup policy. Age alone
+        # never proves the branch landed, so TTL cannot qualify one by itself
+        # — otherwise a worktree holding unmerged commits would be reclaimed.
+        if (merged_pr_cleanup or {}).get("proven"):
+            return CLASS_CLEAN_STALE_REMOVABLE
+        return CLASS_ACTIVE_ISSUE_WORK
+    # conflict_fix: only removable once the TTL has expired.
     if ttl_expired:
         return CLASS_CLEAN_STALE_REMOVABLE
     return CLASS_ACTIVE_ISSUE_WORK
@@ -400,6 +604,20 @@ def remove_worktree(project_root: str, path: str) -> dict[str, Any]:
     }
 
 
+def head_contained_in_ref(
+    project_root: str, head_sha: str | None, ref: str | None
+) -> bool | None:
+    """Return True when ``head_sha`` is already contained in ``ref``.
+
+    Shares :mod:`merged_cleanup_reconcile`'s ancestry check so the audit and
+    the PR-scoped reconciler agree on what "already landed" means (#858).
+    Returns None when containment cannot be determined, which fails closed.
+    """
+    if not head_sha or not ref:
+        return None
+    return is_head_ancestor_of_ref(project_root, head_sha, ref)
+
+
 def _is_under_branches(project_root: str, path: str) -> bool:
     branches_root = os.path.join(os.path.abspath(project_root), "branches")
     return os.path.abspath(path or "").startswith(branches_root + os.sep)
@@ -413,16 +631,30 @@ def audit_branches_directory(
     active_issue_branches: set[str] | None = None,
     now: datetime | str | None = None,
     ttl_hours: float = DEFAULT_TTL_HOURS,
+    pr_index: dict[str, list[dict[str, Any]]] | None = None,
+    leased_issue_numbers: set[int] | None = None,
+    live_session_paths: set[str] | None = None,
+    master_ref: str | None = None,
 ) -> dict[str, Any]:
     """Classify every session-owned worktree under ``branches/``.
 
     Read-only: shells out to git for discovery and dirty state, then applies
     the pure classifier. Returns per-worktree classifications, counts, the
     list of removable candidates, and the ``git worktree list`` proof.
+
+    ``pr_index`` (see :func:`build_pr_index`) supplies the authoritative PR
+    ownership used to link issue worktrees to their merged PR (#858).
+    ``master_ref`` is the ref a worktree head must be contained in before it
+    can be considered landed. Both are optional and their absence only ever
+    fails closed: without them no issue worktree becomes removable.
     """
     open_pr_branches = open_pr_branches or set()
     leased_branches = leased_branches or set()
     active_issue_branches = active_issue_branches or set()
+    leased_issue_numbers = leased_issue_numbers or set()
+    live_session_paths = {
+        os.path.abspath(p) for p in (live_session_paths or set()) if p
+    }
 
     worktrees: list[dict[str, Any]] = []
     for entry in list_worktrees(project_root):
@@ -433,12 +665,42 @@ def audit_branches_directory(
         )
         dirty_state = read_worktree_dirty(path)
         is_dirty = bool(dirty_state.get("dirty"))
+        head_sha = entry.get("head")
+        linkage = resolve_owning_pr(branch=branch, pr_index=pr_index)
         metadata = build_worktree_metadata(
-            path=path, branch=branch, head_sha=entry.get("head")
+            path=path,
+            branch=branch,
+            head_sha=head_sha,
+            pr_number=linkage.get("pr_number"),
         )
         has_open_pr = bool(branch) and branch in open_pr_branches
-        has_active_lease = bool(branch) and branch in leased_branches
+        # A lease on issue N protects that issue's own work worktree. It must
+        # not incidentally protect a baseline/review scratch tree that merely
+        # carries the same issue marker in its name, which would change the
+        # classification of worktrees this policy does not own.
+        has_active_lease = (bool(branch) and branch in leased_branches) or (
+            metadata["workflow_type"] == WORKFLOW_ISSUE_WORK
+            and metadata.get("issue_number") is not None
+            and metadata["issue_number"] in leased_issue_numbers
+        )
         has_active_lock = bool(branch) and branch in active_issue_branches
+        has_live_session = bool(path) and os.path.abspath(path) in live_session_paths
+        head_in_master = (
+            head_contained_in_ref(project_root, head_sha, master_ref)
+            if master_ref
+            else None
+        )
+        merged_pr_cleanup = assess_merged_pr_worktree_cleanup(
+            linkage=linkage,
+            head_sha=head_sha,
+            head_in_master=head_in_master,
+            is_dirty=is_dirty,
+            has_open_pr=has_open_pr,
+            has_active_lease=has_active_lease,
+            has_active_issue_lock=has_active_lock,
+            is_protected=is_protected,
+            has_live_session=has_live_session,
+        )
         ttl_expired = is_ttl_expired(
             last_used_at=metadata.get("last_used_at"), now=now, ttl_hours=ttl_hours
         )
@@ -452,6 +714,8 @@ def audit_branches_directory(
             branch_gone=branch is None and not entry.get("detached"),
             ttl_expired=ttl_expired,
             is_protected=is_protected,
+            merged_pr_cleanup=merged_pr_cleanup,
+            has_live_session=has_live_session,
         )
         metadata["cleanup_eligibility"] = classification
         worktrees.append(
@@ -463,7 +727,10 @@ def audit_branches_directory(
                 "has_open_pr": has_open_pr,
                 "has_active_lease": has_active_lease,
                 "has_active_issue_lock": has_active_lock,
+                "has_live_session": has_live_session,
                 "is_protected": is_protected,
+                "merged_pr_linkage": linkage,
+                "merged_pr_cleanup": merged_pr_cleanup,
                 "classification": classification,
                 "removable": is_removable(classification),
             }