Root cause: macOS Sequoia+ blocks Python.app from executing files carrying the
com.apple.provenance extended attribute. Files written by an agent/IDE terminal
get it (shell scripts and pre-session files do not). This is a macOS security
feature, not a bug in our code — so the fix is an operator workaround, not a
code change to the tools.
- scripts/clear-provenance: recursively removes ONLY com.apple.provenance under
a path (default: repo root); tolerates files without it; leaves other xattrs
intact; supports --dry-run. Advises running from a Full-Disk-Access terminal.
- README Troubleshooting section documenting the symptom, the helper, manual
xattr equivalents, and the Full Disk Access alternative.
Narrow + macOS-specific; no auth/release/worktree/tracker/MCP behavior changed.
Tests: tests/test_clear_provenance.py (6 cases) — dry-run default/explicit path,
missing-path error, bad-flag/too-many-args exit 2, and that only
com.apple.provenance is targeted (not a blanket xattr clear). Dry-run only; no
real xattr mutation.
bash -n clean; py_compile mcp_server.py clean; full suite 319 passed / 0
failures; git diff --check clean; no secrets.
Closes#3.
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
sysadmin
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