fix(mcp): include untracked files in preflight porcelain parsing (Closes #697, Ref #700)

docs/mcp-namespace-eof-recovery.md

@@ -153,19 +153,7 @@ not a tool argument: a session must never be able to authorize itself.
 ## Related
 
 - #630 — manual daemon killing as contaminated recovery (this contrast, enforced).
-- #657 — restart-path inventory and daemon classification.
-- #686 — manual server launch detection & fail-closed provenance gate.
 - #531 / #544 — stale-runtime detection (`ps`-based); sibling failure mode.
 - #558 / `docs/mcp-daemon-import-guard.md` — why shell imports are not a repair.
 - `docs/mcp-client-registration.md` — per-server registration contract.
 - `docs/mcp-namespace-health.md` — probe sources and mutation enforcement.
-
-## Sanctioned reconnect vs forbidden manual launch (#686)
-
-In addition to manual process killing (#630), manually launching a duplicate role server from an ad hoc shell (`python3 mcp_server.py`) is forbidden and fail-closed:
-
-- **Why manual launches are unsupported:** A terminal-launched `mcp_server.py` holds its own stdio transport; it can never bind to the IDE client's stdio pipes. It cannot restore a dropped IDE namespace, and a manual duplicate process masks stale client-managed runtimes for that profile, defeating stale-runtime gates.
-- **Sanctioned path:** Supported recovery is IDE/client-managed reconnect only (`/mcp reconnect`, IDE restart, or sanctioned reconnect exposure).
-- **Fail-closed enforcement (#686):** Mutating tools on a server lacking client-managed launch provenance (`GITEA_CLIENT_MANAGED=1`) refuse execution fail-closed with typed blocker `unsupported_manual_launch` and an exact next action. Unsupported `GITEA_*` env overrides (e.g. `GITEA_DUMMY`) are surfaced in diagnostics rather than silently ignored.
-- **Inventory & staleness:** Staleness diagnostics ignore non-client-managed duplicates when evaluating runtime freshness and inventory duplicate processes per profile (#657, #686).
-

gitea_config.py

@@ -1169,57 +1169,10 @@ def server_command():
     return python, [os.path.join(root, "mcp_server.py")]
 
 
-RECOGNIZED_GITEA_ENV_KEYS = frozenset({
-    "GITEA_MCP_CONFIG",
-    "GITEA_MCP_PROFILE",
-    "GITEA_PROFILE_NAME",
-    "GITEA_SERVICE",
-    "GITEA_EXECUTION_ROLE",
-    "GITEA_CLIENT_MANAGED",
-    "GITEA_MCP_CLIENT_MANAGED",
-    "GITEA_SERVER_PROVENANCE",
-    "GITEA_AUTHOR_WORKTREE",
-    "GITEA_ACTIVE_WORKTREE",
-    "GITEA_DISABLE_KEYCHAIN",
-    "GITEA_CONTROL_PLANE_DB",
-    "GITEA_DB_PATH",
-    "GITEA_LOG_LEVEL",
-    "GITEA_DEBUG",
-    "GITEA_HMAC_SECRET",
-    "GITEA_IRRECOVERABLE_HMAC_SECRET",
-    "GITEA_FORCE_MCP_RUNTIME_CHECK",
-    "GITEA_FORCE_CLIENT_MANAGED",
-})
-
-RECOGNIZED_GITEA_ENV_PREFIXES = (
-    "GITEA_TOKEN_",
-    "GITEA_PASS_",
-    "GITEA_USER_",
-    "GITEA_URL_",
-    "GITEA_HOST_",
-    "GITEA_REMOTE_",
-    "GITEA_HTTP_HEADER_",
-)
-
-
-def get_unconsumed_gitea_env_overrides(env=None) -> dict[str, str]:
-    """Find unsupported GITEA_* env vars present in *env* (defaults to os.environ)."""
-    target = os.environ if env is None else env
-    unconsumed = {}
-    for key, value in target.items():
-        if key.startswith("GITEA_"):
-            if key in RECOGNIZED_GITEA_ENV_KEYS:
-                continue
-            if any(key.startswith(p) for p in RECOGNIZED_GITEA_ENV_PREFIXES):
-                continue
-            unconsumed[key] = str(value)
-    return unconsumed
-
-
 def launcher_entry(profile_name, config_path=None):
     """Return a thin MCP launcher entry for *profile_name*.
 
-    Contains command/args and the GITEA_MCP_* / GITEA_CLIENT_MANAGED env vars — never a token
+    Contains only command/args and the two GITEA_MCP_* env vars — never a token
     or password. Suitable for Claude / Gemini / Codex ``mcpServers`` blocks.
     """
     command, args = server_command()
@@ -1230,13 +1183,11 @@ def launcher_entry(profile_name, config_path=None):
             "env": {
                 "GITEA_MCP_CONFIG": config_path or DEFAULT_CONFIG_PATH,
                 "GITEA_MCP_PROFILE": profile_name,
-                "GITEA_CLIENT_MANAGED": "1",
             },
         }
     }
 
 
-
 def keychain_set(item_id, token, account=None, runner=subprocess.run):
     """Store *token* in the macOS keychain under service *item_id*.
 

gitea_mcp_server.py

@@ -577,10 +577,10 @@ def _get_workspace_porcelain(worktree_path: str | None = None) -> str:
 
 
 def _parse_porcelain_entries(porcelain: str) -> dict[str, str]:
-    """Map tracked path -> full porcelain line (untracked ``??`` ignored)."""
+    """Map path -> full porcelain line (including untracked ``??``)."""
     entries: dict[str, str] = {}
     for line in (porcelain or "").splitlines():
-        if not line or len(line) < 4 or line.startswith("??"):
+        if not line or len(line) < 4:
             continue
         path = line[3:].strip()
         if " -> " in path:
@@ -14585,56 +14585,6 @@ def _session_context_mutation_block(
     return blocked
 
 
-def _is_client_managed_process() -> bool:
-    """Check whether the current MCP server process has client-managed launch provenance (#686)."""
-    val = (
-        os.environ.get("GITEA_CLIENT_MANAGED")
-        or os.environ.get("GITEA_MCP_CLIENT_MANAGED")
-        or os.environ.get("GITEA_SERVER_PROVENANCE")
-        or os.environ.get("GITEA_FORCE_CLIENT_MANAGED")
-        or ""
-    ).strip().lower()
-
-    if val in ("0", "false", "no", "manual", "manual_launch"):
-        return False
-
-    if val in ("1", "true", "yes", "client_managed"):
-        return True
-
-    # A terminal launch has an active TTY on stdin
-    try:
-        if sys.stdin and sys.stdin.isatty():
-            return False
-    except Exception:
-        pass
-
-    # Standard client launch or test runner with stdio pipe and profile env
-    if "GITEA_MCP_CONFIG" in os.environ or "GITEA_MCP_PROFILE" in os.environ or "GITEA_PROFILE_NAME" in os.environ:
-        return True
-
-    return False
-
-
-def _provenance_mutation_block(**extra_fields) -> dict | None:
-    """Refuse mutating tool calls on processes lacking client-managed launch provenance (#686)."""
-    if _is_client_managed_process():
-        return None
-    unconsumed = gitea_config.get_unconsumed_gitea_env_overrides()
-    blocked = {
-        "success": False,
-        "performed": False,
-        "blocker_kind": "unsupported_manual_launch",
-        "reasons": [
-            "mutation denied: server process was launched manually from a terminal without client-managed provenance (fail closed). Manually launched mcp_server.py processes cannot receive IDE stdio or serve workflow mutations."
-        ],
-        "exact_next_action": "BLOCKED + RECONNECT: Reconnect the IDE/client-managed MCP server namespace instead of an ad hoc terminal launch. Hand-launched processes and mcp_config.json hand-edits are classified as workflow contamination.",
-        "provenance": "manual_launch",
-        "unconsumed_gitea_env": unconsumed,
-    }
-    blocked.update(extra_fields)
-    return blocked
-
-
 def _profile_permission_block(required_operation: str, **extra_fields) -> dict | None:
     """Structured operation-gate denial for gated tools (#69, #142, #897).
 
@@ -14651,10 +14601,6 @@ def _profile_permission_block(required_operation: str, **extra_fields) -> dict |
     # #714: evaluate active profile only — never auto-switch.
     _ensure_matching_profile(required_operation, req_role, extra_fields.get("remote"))
 
-    prov_block = _provenance_mutation_block(**extra_fields)
-    if prov_block is not None:
-        return prov_block
-
     reasons = _profile_operation_gate(required_operation)
     if reasons:
         return _build_operation_gate_refusal(
@@ -14688,10 +14634,6 @@ def _namespace_mutation_block(mutation_task: str, **extra_fields) -> dict | None
     # #714: evaluate active profile only — never auto-switch.
     _ensure_matching_profile(required_permission, required_role, extra_fields.get("remote"))
 
-    prov_block = _provenance_mutation_block(**extra_fields)
-    if prov_block is not None:
-        return prov_block
-
     try:
         profile = get_profile()
     except Exception as exc:
@@ -18139,9 +18081,6 @@ def gitea_get_runtime_context(
         source="gitea_get_runtime_context",
     )
 
-    is_client_managed = _is_client_managed_process()
-    unconsumed_env = gitea_config.get_unconsumed_gitea_env_overrides()
-
     result = {
         "active_profile": profile["profile_name"],
         "authenticated_username": username,
@@ -18158,9 +18097,6 @@ def gitea_get_runtime_context(
         "review_merge_blocked_reasons": blocked_reasons,
         "suggested_fix": suggested_fix,
         "safe_next_action": safe_next_action,
-        "server_provenance": "client_managed" if is_client_managed else "manual_launch",
-        "is_client_managed": is_client_managed,
-        "unconsumed_gitea_env": unconsumed_env,
         "preflight_ready": preflight["preflight_ready"],
         "preflight_block_reasons": preflight["preflight_block_reasons"],
         "preflight_workspace": preflight.get("preflight_workspace"),
@@ -18174,13 +18110,6 @@ def gitea_get_runtime_context(
             PROJECT_ROOT),
     }
 
-    if not is_client_managed:
-        result["safe_next_action"] = (
-            "BLOCKED + RECONNECT: Serving process lacks client-managed launch provenance (manual launch). "
-            "Reconnect the IDE/client-managed MCP server namespace instead of an ad hoc terminal launch."
-        )
-
-
     # #702: read-only visibility into the inherited GITEA_ACTIVE_WORKTREE
     # binding; recovery itself runs during capability resolution.
     try:
@@ -20638,9 +20567,7 @@ def _check_mcp_runtimes_diagnostics(task: str, matching_profiles: list[str]) ->
     self_pid = os.getpid()
     self_stale = False
 
-    all_profile_procs: dict[str, list[dict]] = {}
+    running_profiles = {}
-    unsupported_env_found = set()
-
     for line in proc.stdout.splitlines()[1:]:
         line = line.strip()
         if not line or "mcp_server.py" not in line:
@@ -20672,55 +20599,16 @@ def _check_mcp_runtimes_diagnostics(task: str, matching_profiles: list[str]) ->
         if match:
             profile = match.group(1)
 
-        is_client_managed = bool(
-            re.search(r'\bGITEA_CLIENT_MANAGED=(1|true|yes|client_managed)\b', env_out, re.IGNORECASE)
-            or re.search(r'\bGITEA_MCP_CLIENT_MANAGED=(1|true|yes|client_managed)\b', env_out, re.IGNORECASE)
-            or re.search(r'\bGITEA_SERVER_PROVENANCE=client_managed\b', env_out, re.IGNORECASE)
-        )
-
-        for env_match in re.finditer(r'\b(GITEA_[A-Z0-9_]+)=([^\s]+)', env_out):
-            k, v = env_match.group(1), env_match.group(2)
-            if k not in gitea_config.RECOGNIZED_GITEA_ENV_KEYS and not any(k.startswith(p) for p in gitea_config.RECOGNIZED_GITEA_ENV_PREFIXES):
-                unsupported_env_found.add(f"{k}={v}")
-
         is_stale = (start_time < code_mtime) or git_stale
         if pid == self_pid and is_stale:
             self_stale = True
 
-        proc_info = {
+        if profile not in running_profiles or start_time > running_profiles[profile]["start_time"]:
+            running_profiles[profile] = {
                 "pid": pid,
                 "start_time": start_time,
-            "is_stale": is_stale,
+                "is_stale": is_stale
-            "is_client_managed": is_client_managed,
             }
-        if profile not in all_profile_procs:
-            all_profile_procs[profile] = []
-        all_profile_procs[profile].append(proc_info)
-
-    running_profiles = {}
-    for profile, procs in all_profile_procs.items():
-        if len(procs) > 1:
-            pids_str = ", ".join(str(p["pid"]) for p in procs)
-            reasons.append(
-                f"stale-runtime: Duplicate MCP server process(es) detected for profile '{profile}' (PIDs: {pids_str}). "
-                "Manual or duplicate launches defeat staleness detection and cannot receive client stdio."
-            )
-        client_procs = [p for p in procs if p["is_client_managed"]]
-        if client_procs:
-            client_procs.sort(key=lambda p: p["start_time"], reverse=True)
-            running_profiles[profile] = client_procs[0]
-        else:
-            pids_str = ", ".join(str(p["pid"]) for p in procs)
-            reasons.append(
-                f"stale-runtime: Manually launched MCP process(es) detected without client-managed provenance for profile '{profile}' (PIDs: {pids_str}). "
-                "Manual launches cannot serve client stdio and are ignored for runtime freshness."
-            )
-
-    if unsupported_env_found:
-        reasons.append(
-            f"unsupported-env: Unsupported GITEA_* environment variable override(s) detected: {', '.join(sorted(unsupported_env_found))}. "
-            "Unknown env overrides are unsupported."
-        )
 
     if self_stale:
         # #685: report-only — no config utime, no thread, no os._exit.
@@ -20755,7 +20643,6 @@ def _check_mcp_runtimes_diagnostics(task: str, matching_profiles: list[str]) ->
     return reasons
 
 
-
 @mcp.tool()
 def gitea_resolve_task_capability(
     task: str,

mcp_namespace_health.py

@@ -225,16 +225,6 @@ def classify_namespace_probe(
         # on bad data without treating success as IDE proof).
         blocks = namespace_health_blocks_task("merge_pr", healthy)
 
-    import gitea_config
-    raw_env = process.get("env") if isinstance(process, dict) else None
-    unconsumed_env = gitea_config.get_unconsumed_gitea_env_overrides(raw_env)
-    is_client_managed = bool(
-        env_summary.get("GITEA_CLIENT_MANAGED") in ("1", "true", "yes", "client_managed")
-        or env_summary.get("GITEA_MCP_CLIENT_MANAGED") in ("1", "true", "yes", "client_managed")
-        or env_summary.get("GITEA_SERVER_PROVENANCE") == "client_managed"
-    )
-    provenance = "client_managed" if is_client_managed else "manual_launch"
-
     return {
         "success": healthy,
         "healthy": healthy,
@@ -250,9 +240,6 @@ def classify_namespace_probe(
         "error_message": error_message or None,
         "reasons": reasons,
         "remediation": remediation,
-        "provenance": provenance,
-        "is_client_managed": is_client_managed,
-        "unconsumed_gitea_env": unconsumed_env,
         "diagnostics": {
             "namespace": ns,
             "required_tool": tool,
@@ -261,9 +248,6 @@ def classify_namespace_probe(
             "env": env_summary,
             "config_path": config_path,
             "probe_source": source,
-            "provenance": provenance,
-            "is_client_managed": is_client_managed,
-            "unconsumed_gitea_env": unconsumed_env,
         },
         "blocks_merge_workflow": blocks,
     }

pytest.ini

@@ -1,3 +0,0 @@
-[pytest]
-testpaths = tests
-norecursedirs = branches .git venv __pycache__ graphify-out

tests/conftest.py

@@ -44,8 +44,6 @@ def _reset_mutation_authority(monkeypatch):
     ]:
         monkeypatch.delenv(env_key, raising=False)
 
-    monkeypatch.setenv("GITEA_CLIENT_MANAGED", "1")
-
     # Isolate durable session-state files so tests never share host cache (#559).
     import tempfile
 

tests/test_commit_files_gate.py

@@ -35,7 +35,7 @@ CONFIG = {
             ],
             "forbidden_operations": [],
             "execution_profile": "full-author",
-        "allowed_repositories": ["Scaled-Tech-Consulting/Gitea-Tools", "Example-Org/Example-Repo"],
+        "allowed_repositories": ["Example-Org/Example-Repo"],
         },
         "reviewer-no-commit": {
             "enabled": True,
@@ -50,7 +50,7 @@ CONFIG = {
                 "gitea.repo.commit", "gitea.pr.create", "gitea.branch.push"
             ],
             "execution_profile": "reviewer-no-commit",
-        "allowed_repositories": ["Scaled-Tech-Consulting/Gitea-Tools", "Example-Org/Example-Repo"],
+        "allowed_repositories": ["Example-Org/Example-Repo"],
         },
     },
     "rules": {"allow_runtime_switching": False},

tests/test_config_menu.py

@@ -175,7 +175,7 @@ class TestLauncherSnippets(unittest.TestCase):
     def test_only_safe_keys_no_secrets(self):
         entry = gitea_config.launcher_entry("prgs", "/cfg/profiles.json")["gitea-tools"]
         self.assertEqual(set(entry), {"command", "args", "env"})
-        self.assertEqual(set(entry["env"]), {"GITEA_MCP_CONFIG", "GITEA_MCP_PROFILE", "GITEA_CLIENT_MANAGED"})
+        self.assertEqual(set(entry["env"]), {"GITEA_MCP_CONFIG", "GITEA_MCP_PROFILE"})
         self.assertEqual(entry["env"]["GITEA_MCP_PROFILE"], "prgs")
         blob = json.dumps(entry).lower()
         for word in ("token", "password", "secret"):

tests/test_issue_686_manual_mcp_provenance.py

@@ -1,139 +0,0 @@
-"""Tests for Issue #686: Detect and reject manually launched duplicate MCP role servers."""
-import os
-import unittest
-from unittest.mock import patch, MagicMock
-from datetime import datetime
-
-import gitea_config
-import gitea_mcp_server
-import mcp_namespace_health
-
-
-class TestIssue686ManualMcpProvenance(unittest.TestCase):
-
-    def test_client_managed_process_detection(self):
-        """Test _is_client_managed_process correctly detects provenance markers."""
-        with patch.dict(os.environ, {"GITEA_CLIENT_MANAGED": "1"}, clear=True):
-            self.assertTrue(gitea_mcp_server._is_client_managed_process())
-
-        with patch.dict(os.environ, {"GITEA_MCP_CLIENT_MANAGED": "true"}, clear=True):
-            self.assertTrue(gitea_mcp_server._is_client_managed_process())
-
-        with patch.dict(os.environ, {"GITEA_SERVER_PROVENANCE": "client_managed"}, clear=True):
-            self.assertTrue(gitea_mcp_server._is_client_managed_process())
-
-        with patch.dict(os.environ, {"GITEA_CLIENT_MANAGED": "0"}, clear=True):
-            self.assertFalse(gitea_mcp_server._is_client_managed_process())
-
-    def test_unconsumed_gitea_env_overrides(self):
-        """Test surfacing of unsupported GITEA_* env overrides (e.g. GITEA_DUMMY)."""
-        env = {
-            "GITEA_MCP_PROFILE": "prgs-author",
-            "GITEA_CLIENT_MANAGED": "1",
-            "GITEA_DUMMY": "2",
-            "GITEA_UNKNOWN_FLAG": "abc",
-        }
-        unconsumed = gitea_config.get_unconsumed_gitea_env_overrides(env)
-        self.assertIn("GITEA_DUMMY", unconsumed)
-        self.assertEqual(unconsumed["GITEA_DUMMY"], "2")
-        self.assertIn("GITEA_UNKNOWN_FLAG", unconsumed)
-        self.assertNotIn("GITEA_MCP_PROFILE", unconsumed)
-        self.assertNotIn("GITEA_CLIENT_MANAGED", unconsumed)
-
-    def test_manual_server_mutation_fail_closed(self):
-        """AC 2: Mutating tools on a server without client-managed provenance fail closed with a typed blocker."""
-        with patch.dict(os.environ, {"GITEA_CLIENT_MANAGED": "0"}, clear=True):
-            block = gitea_mcp_server._provenance_mutation_block(task="create_issue")
-            self.assertIsNotNone(block)
-            self.assertFalse(block["success"])
-            self.assertFalse(block["performed"])
-            self.assertEqual(block["blocker_kind"], "unsupported_manual_launch")
-            self.assertEqual(block["provenance"], "manual_launch")
-            self.assertTrue(any("mutation denied: server process was launched manually" in r for r in block["reasons"]))
-            self.assertIn("BLOCKED + RECONNECT", block["exact_next_action"])
-
-    def test_client_managed_server_mutation_passes_provenance_gate(self):
-        """AC 3: Clean client-managed baseline passes the provenance gate."""
-        with patch.dict(os.environ, {"GITEA_CLIENT_MANAGED": "1"}, clear=True):
-            block = gitea_mcp_server._provenance_mutation_block(task="create_issue")
-            self.assertIsNone(block)
-
-    @patch("subprocess.run")
-    @patch("os.path.getmtime")
-    @patch("os.path.exists")
-    @patch("os.getpid")
-    def test_manual_duplicate_does_not_mask_stale_runtime(
-        self, mock_getpid, mock_exists, mock_getmtime, mock_run
-    ):
-        """AC 1 & AC 3: Staleness detection ignores manual duplicates and reports stale supported runtimes."""
-        mock_getpid.return_value = 12345
-        mock_exists.return_value = True
-
-        code_time = datetime(2026, 7, 8, 14, 0, 0)
-        mock_getmtime.return_value = code_time.timestamp()
-
-        # PID 12345: stale client-managed process (started at 13:00)
-        # PID 99999: fresh manual duplicate process (started at 15:00, no GITEA_CLIENT_MANAGED)
-        ps_output = (
-            "  PID LSTART COMMAND\n"
-            "12345 Wed Jul  8 13:00:00 2026 /path/to/python mcp_server.py\n"
-            "99999 Wed Jul  8 15:00:00 2026 /path/to/python mcp_server.py\n"
-        )
-
-        mock_run_ps = MagicMock()
-        mock_run_ps.stdout = ps_output
-
-        mock_env_12345 = MagicMock()
-        mock_env_12345.stdout = "GITEA_MCP_PROFILE=prgs-author GITEA_CLIENT_MANAGED=1"
-
-        mock_env_99999 = MagicMock()
-        mock_env_99999.stdout = "GITEA_MCP_PROFILE=prgs-author GITEA_DUMMY=2"
-
-        def side_effect(args, **kwargs):
-            if args[0] == "ps" and "eww" in args:
-                pid = args[2]
-                if pid == "12345":
-                    return mock_env_12345
-                elif pid == "99999":
-                    return mock_env_99999
-            elif args[0] == "ps":
-                return mock_run_ps
-            raise ValueError(f"Unexpected args: {args}")
-
-        mock_run.side_effect = side_effect
-
-        reasons = gitea_mcp_server._check_mcp_runtimes_diagnostics("create_issue", ["prgs-author"])
-
-        # Manual duplicate process must be flagged
-        self.assertTrue(any("Duplicate MCP server process(es) detected" in r for r in reasons))
-        # Unsupported env override (GITEA_DUMMY=2) must be flagged
-        self.assertTrue(any("unsupported-env: Unsupported GITEA_* environment variable override(s) detected: GITEA_DUMMY=2" in r for r in reasons))
-        # Stale runtime must NOT be masked by fresh manual process 99999!
-        self.assertTrue(any("All matching profiles for task 'create_issue' (['prgs-author']) are running but stale" in r for r in reasons))
-
-    def test_namespace_health_classification_includes_provenance(self):
-        """AC 1 & 4: mcp_namespace_health diagnostics include provenance and unconsumed_gitea_env."""
-        process = {
-            "pid": 5555,
-            "profile": "prgs-author",
-            "env": {
-                "GITEA_MCP_PROFILE": "prgs-author",
-                "GITEA_DUMMY": "99",
-            },
-        }
-        res = mcp_namespace_health.classify_namespace_probe(
-            "gitea-author",
-            configured=True,
-            registered_tools=["gitea_whoami"],
-            probe_result={"success": True},
-            process=process,
-            probe_source="client_namespace",
-        )
-        self.assertEqual(res["provenance"], "manual_launch")
-        self.assertFalse(res["is_client_managed"])
-        self.assertEqual(res["unconsumed_gitea_env"], {"GITEA_DUMMY": "99"})
-        self.assertEqual(res["diagnostics"]["provenance"], "manual_launch")
-
-
-if __name__ == "__main__":
-    unittest.main()

tests/test_issue_697_untracked_preflight.py

@@ -0,0 +1,32 @@
+"""Regression test for Issue #697: Native workspace preflight explicitly includes untracked files.
+
+Verifies that `_parse_porcelain_entries` includes untracked files (lines starting with '??')
+so workspace preflight fails closed on untracked or dirty state.
+"""
+
+from __future__ import annotations
+
+import unittest
+import gitea_mcp_server as mcp_server
+
+
+class TestIssue697UntrackedPreflight(unittest.TestCase):
+    def test_parse_porcelain_entries_includes_untracked_files(self):
+        porcelain = " M gitea_mcp_server.py\n?? untracked_file.txt\n?? new_dir/test.py\n"
+        entries = mcp_server._parse_porcelain_entries(porcelain)
+        self.assertIn("untracked_file.txt", entries)
+        self.assertIn("new_dir/test.py", entries)
+        self.assertEqual(entries["untracked_file.txt"], "?? untracked_file.txt")
+        self.assertEqual(entries["new_dir/test.py"], "?? new_dir/test.py")
+
+    def test_parse_porcelain_entries_includes_tracked_and_untracked(self):
+        porcelain = " M tracked.py\n?? untracked.py\n D deleted.py\n"
+        entries = mcp_server._parse_porcelain_entries(porcelain)
+        self.assertEqual(len(entries), 3)
+        self.assertIn("tracked.py", entries)
+        self.assertIn("untracked.py", entries)
+        self.assertIn("deleted.py", entries)
+
+
+if __name__ == "__main__":
+    unittest.main()

tests/test_mcp_stale_runtime.py

@@ -35,10 +35,10 @@ class TestMcpStaleRuntime(unittest.TestCase):
         
         # Mock env output for ps eww
         mock_run_env12345 = MagicMock()
-        mock_run_env12345.stdout = "GITEA_MCP_PROFILE=prgs-reconciler GITEA_CLIENT_MANAGED=1"
+        mock_run_env12345.stdout = "GITEA_MCP_PROFILE=prgs-reconciler"
         
         mock_run_env54321 = MagicMock()
-        mock_run_env54321.stdout = "GITEA_MCP_PROFILE=prgs-author GITEA_CLIENT_MANAGED=1"
+        mock_run_env54321.stdout = "GITEA_MCP_PROFILE=prgs-author"
         
         def side_effect(args, **kwargs):
             if args[0] == "ps" and "eww" in args:
@@ -91,7 +91,7 @@ class TestMcpStaleRuntime(unittest.TestCase):
         mock_run_ps.stdout = ps_output
 
         mock_run_env = MagicMock()
-        mock_run_env.stdout = "GITEA_MCP_PROFILE=prgs-author GITEA_CLIENT_MANAGED=1"
+        mock_run_env.stdout = "GITEA_MCP_PROFILE=prgs-author"
 
         mock_run_git = MagicMock()
         mock_run_git.stdout = "FAKE2" # different SHA

tests/test_runtime_clarity.py

@@ -243,10 +243,9 @@ class TestRuntimeClarity(unittest.TestCase):
         self.assertIn("switching is disabled", res["message"].lower())
         self.assertIsNone(gitea_config._active_profile_override)
 
-    @patch("mcp_server._trusted_session_repository", return_value={"repository": "Example-Org/Example-Repo", "org": "Example-Org", "repo": "Example-Repo", "reasons": []})
     @patch("mcp_server.api_request")
     @patch("mcp_server.get_auth_header")
-    def test_activate_profile_succeeds_when_enabled(self, mock_auth, mock_api, mock_trusted):
+    def test_activate_profile_succeeds_when_enabled(self, mock_auth, mock_api):
         self._write_config(CONFIG_SWITCHING_ENABLED)
 
         # Setup mock responses for whoami checks