feat(mcp): detect Connected-but-namespaces-missing attachment failures (Closes #708)

author_issue_bootstrap.py

@@ -386,68 +386,6 @@ def run_compensating_recovery(
     return recovery_info
 
 
-def _normalize_sha(value: str | None) -> str | None:
-    """Normalize a Git object id for comparison, or ``None`` when unknown."""
-    normalized = (value or "").strip().lower()
-    return normalized or None
-
-
-def _author_bootstrap_assessment(
-    *,
-    not_applicable: bool,
-    allowed: bool,
-    block: bool,
-    reasons: list[str],
-    workspace: str,
-    root: str,
-    branch: str | None,
-    dirty: list[str],
-    under_branches: bool,
-    bootstrap_path: str | None = None,
-    local_head_sha: str | None = None,
-    remote_master_sha: str | None = None,
-    exact_next_action: str | None = None,
-) -> dict[str, Any]:
-    """Structured author-bootstrap assessment consumable by bootstrap_permits (#892).
-
-    Field shape mirrors :func:`create_issue_bootstrap._result` so the shared
-    ``bootstrap_permits_control_checkout`` predicate can prove control-checkout
-    eligibility for ``gitea_bootstrap_author_issue_worktree`` the same way it
-    does for ``create_issue``. Allowed control assessments must use empty
-    ``reasons`` — narrative belongs in other fields, not the refusal list.
-    """
-    local_tip = _normalize_sha(local_head_sha)
-    remote_tip = _normalize_sha(remote_master_sha)
-    base_tips_verified = bool(local_tip and remote_tip and local_tip == remote_tip)
-    return {
-        "not_applicable": not_applicable,
-        "allowed": allowed,
-        "block": block,
-        "proven": bool(allowed and not block and not not_applicable),
-        "reasons": list(reasons),
-        "workspace_path": workspace,
-        "canonical_repo_root": root,
-        "current_branch": branch,
-        "dirty_files": list(dirty),
-        "under_branches": under_branches,
-        "exact_next_action": exact_next_action,
-        "bootstrap_path": bootstrap_path,
-        "task_scope": "author_issue_bootstrap",
-        "local_head_sha": local_tip,
-        "remote_master_sha": remote_tip,
-        "base_tips_verified": base_tips_verified,
-    }
-
-
-EXACT_NEXT_ACTION_AUTHOR_BOOTSTRAP = (
-    "Restore the canonical control checkout to a clean accepted base branch "
-    "(master/main/dev) that matches live master, with no tracked local edits. "
-    "Re-resolve bootstrap_author_issue_worktree, then re-run "
-    "gitea_bootstrap_author_issue_worktree from that clean control checkout. "
-    "Do not use shell git worktree add as the primary path once bootstrap is healthy."
-)
-
-
 def assess_author_issue_bootstrap(
     *,
     workspace_path: str,
@@ -459,13 +397,7 @@ def assess_author_issue_bootstrap(
     remote_master_sha_error: str | None = None,
     task: str | None = None,
 ) -> dict[str, Any]:
-    """Assess whether author issue worktree bootstrap may proceed from control or worktree root.
+    """Assess whether author issue worktree bootstrap may proceed from control or worktree root."""
-
-    #892: control-checkout successes emit the full field set required by
-    ``create_issue_bootstrap.bootstrap_permits_control_checkout`` (empty reasons,
-    task_scope, base tip proof, binding paths) so the #274/#604 guards can
-    waive control-checkout for this one sanctioned bootstrap task.
-    """
     root = os.path.realpath(canonical_repo_root or "")
     workspace = os.path.realpath(workspace_path or root or ".")
     branch = (current_branch or "").strip()
@@ -475,50 +407,34 @@ def assess_author_issue_bootstrap(
         if root
         else False
     )
-    local_tip = _normalize_sha(head_sha)
-    remote_tip = _normalize_sha(remote_master_sha)
 
     if not is_author_issue_bootstrap_task(task):
-        return _author_bootstrap_assessment(
+        return {
-            not_applicable=True,
+            "not_applicable": True,
-            allowed=False,
+            "allowed": False,
-            block=False,
+            "block": False,
-            reasons=["task is not author_issue_bootstrap"],
+            "proven": False,
-            workspace=workspace,
+            "reasons": ["task is not author_issue_bootstrap"],
-            root=root,
+        }
-            branch=branch or None,
-            dirty=dirty,
-            under_branches=under_branches,
-        )
 
-    # Already under branches/: ordinary #274 path applies; not a control waiver.
     if under_branches:
-        return _author_bootstrap_assessment(
+        return {
-            not_applicable=True,
+            "not_applicable": False,
-            allowed=False,
+            "allowed": True,
-            block=False,
+            "block": False,
-            reasons=["workspace is under branches/; ordinary #274 path applies"],
+            "proven": True,
-            workspace=workspace,
+            "bootstrap_path": "existing_branches_worktree",
-            root=root,
+            "reasons": [
-            branch=branch or None,
+                "workspace is already a registered worktree under branches/"
-            dirty=dirty,
+            ],
-            under_branches=True,
+        }
-            bootstrap_path="existing_branches_worktree",
-            local_head_sha=local_tip,
-            remote_master_sha=remote_tip,
-        )
 
     reasons: list[str] = []
-    if not root or workspace != root:
+    if workspace != root:
         reasons.append(
             "bootstrap requires workspace to be canonical control checkout or branches/ worktree"
         )
-    if not branch:
+    if branch not in author_mutation_worktree.BASE_BRANCHES:
-        reasons.append(
-            "control checkout is detached HEAD; expected an accepted base branch "
-            f"({', '.join(sorted(author_mutation_worktree.BASE_BRANCHES))})"
-        )
-    elif branch not in author_mutation_worktree.BASE_BRANCHES:
         reasons.append(
             f"control checkout branch '{branch}' is not an accepted base branch "
             f"({', '.join(sorted(author_mutation_worktree.BASE_BRANCHES))})"
@@ -528,64 +444,37 @@ def assess_author_issue_bootstrap(
             f"control checkout has tracked local edits: {', '.join(dirty[:5])}"
         )
 
-    # Fail closed on missing tip proof (same bar as create_issue bootstrap #757).
+    if remote_master_sha_error:
-    if not local_tip:
         reasons.append(
-            "control checkout HEAD SHA is unknown; base equivalence to live "
+            f"could not verify live master tip: {remote_master_sha_error}"
-            "master cannot be proven (fail closed)"
         )
-    resolver_error = (remote_master_sha_error or "").strip() or None
+    elif remote_master_sha and head_sha:
-    if resolver_error:
+        h = head_sha.strip().lower()
+        rm = remote_master_sha.strip().lower()
+        if h != rm:
             reasons.append(
-            f"live master tip could not be resolved ({resolver_error}); "
+                f"control checkout HEAD ({h[:12]}) != live master tip ({rm[:12]})"
-            "base equivalence cannot be proven (fail closed)"
-        )
-    elif not remote_tip:
-        reasons.append(
-            "live master tip is unknown; base equivalence cannot be proven "
-            "(fail closed)"
-        )
-    elif local_tip and remote_tip and local_tip != remote_tip:
-        reasons.append(
-            f"control checkout HEAD ({local_tip[:12]}) != live master tip "
-            f"({remote_tip[:12]})"
             )
 
     if reasons:
-        return _author_bootstrap_assessment(
+        return {
-            not_applicable=False,
+            "not_applicable": False,
-            allowed=False,
+            "allowed": False,
-            block=True,
+            "block": True,
-            reasons=reasons,
+            "proven": False,
-            workspace=workspace,
+            "reasons": reasons,
-            root=root,
+        }
-            branch=branch or None,
-            dirty=dirty,
-            under_branches=False,
-            local_head_sha=local_tip,
-            remote_master_sha=remote_tip,
-            exact_next_action=EXACT_NEXT_ACTION_AUTHOR_BOOTSTRAP,
-        )
 
-    # Allowed: empty reasons so bootstrap_permits_control_checkout can pass.
+    return {
-    return _author_bootstrap_assessment(
+        "not_applicable": False,
-        not_applicable=False,
+        "allowed": True,
-        allowed=True,
+        "block": False,
-        block=False,
+        "proven": True,
-        reasons=[],
+        "bootstrap_path": "clean_canonical_control_checkout",
-        workspace=workspace,
+        "reasons": [
-        root=root,
+            "control checkout is clean on accepted base branch matching live master"
-        branch=branch or None,
+        ],
-        dirty=dirty,
+    }
-        under_branches=False,
-        bootstrap_path="clean_canonical_control_checkout",
-        local_head_sha=local_tip,
-        remote_master_sha=remote_tip,
-        exact_next_action=(
-            "Call gitea_bootstrap_author_issue_worktree with the allocated "
-            "issue/lease pins; it will create the branches/ worktree and lock."
-        ),
-    )
 
 
 import fcntl

create_issue_bootstrap.py

@@ -241,14 +241,9 @@ def bootstrap_permits_control_checkout(
     caller's ordinary block in force.
 
     ``assessment`` is server-derived only: it is produced by
-    :func:`assess_create_issue_bootstrap` or
+    :func:`assess_create_issue_bootstrap` from inspected repository state. It is
-    :func:`author_issue_bootstrap.assess_author_issue_bootstrap` from inspected
+    never accepted from an MCP tool argument, so no caller can assert
-    repository state. It is never accepted from an MCP tool argument, so no
+    eligibility it has not proven.
-    caller can assert eligibility it has not proven.
-
-    #892: author issue worktree bootstrap uses the same predicate with
-    ``task_scope='author_issue_bootstrap'`` so a clean control checkout can
-    create the first ``branches/`` worktree without the lock↔worktree cycle.
     """
     if not isinstance(assessment, dict):
         return False
@@ -269,16 +264,9 @@ def bootstrap_permits_control_checkout(
     if assessment.get("reasons"):
         return False
 
-    # Scope proof: create_issue (#749) or author issue bootstrap (#850/#892),
+    # Scope proof: only the create_issue bootstrap, only via the clean
-    # only via the clean canonical control checkout path.
+    # canonical control checkout path.
-    task_scope = assessment.get("task_scope")
+    if assessment.get("task_scope") != "create_issue_only":
-    if is_create_issue_task(task):
-        if task_scope != "create_issue_only":
-            return False
-    elif author_issue_bootstrap.is_author_issue_bootstrap_task(task):
-        if task_scope != "author_issue_bootstrap":
-            return False
-    else:
         return False
     if assessment.get("bootstrap_path") != "clean_canonical_control_checkout":
         return False

docs/mcp-namespace-eof-recovery.md

@@ -153,7 +153,19 @@ not a tool argument: a session must never be able to authorize itself.
 ## Related
 
 - #630 — manual daemon killing as contaminated recovery (this contrast, enforced).
+- #657 — restart-path inventory and daemon classification.
+- #686 — manual server launch detection & fail-closed provenance gate.
 - #531 / #544 — stale-runtime detection (`ps`-based); sibling failure mode.
 - #558 / `docs/mcp-daemon-import-guard.md` — why shell imports are not a repair.
 - `docs/mcp-client-registration.md` — per-server registration contract.
 - `docs/mcp-namespace-health.md` — probe sources and mutation enforcement.
+
+## Sanctioned reconnect vs forbidden manual launch (#686)
+
+In addition to manual process killing (#630), manually launching a duplicate role server from an ad hoc shell (`python3 mcp_server.py`) is forbidden and fail-closed:
+
+- **Why manual launches are unsupported:** A terminal-launched `mcp_server.py` holds its own stdio transport; it can never bind to the IDE client's stdio pipes. It cannot restore a dropped IDE namespace, and a manual duplicate process masks stale client-managed runtimes for that profile, defeating stale-runtime gates.
+- **Sanctioned path:** Supported recovery is IDE/client-managed reconnect only (`/mcp reconnect`, IDE restart, or sanctioned reconnect exposure).
+- **Fail-closed enforcement (#686):** Mutating tools on a server lacking client-managed launch provenance (`GITEA_CLIENT_MANAGED=1`) refuse execution fail-closed with typed blocker `unsupported_manual_launch` and an exact next action. Unsupported `GITEA_*` env overrides (e.g. `GITEA_DUMMY`) are surfaced in diagnostics rather than silently ignored.
+- **Inventory & staleness:** Staleness diagnostics ignore non-client-managed duplicates when evaluating runtime freshness and inventory duplicate processes per profile (#657, #686).
+

docs/mcp-namespace-health.md

@@ -86,3 +86,26 @@ When a namespace returns EOF, follow
 
 When blocked, repair the IDE namespace and re-record a healthy
 `client_namespace` assessment before retrying the mutation.
+
+## Connected vs Attached Tool Surface (#708)
+
+MCP servers can report **Connected** at the CLI / host inventory layer while the **active LLM session exposes none of their tool namespaces**.
+
+### Core principle
+
+* **Connected status at host layer ≠ attached tools in active session.**
+* Required preflight proof is **live tool visibility + `gitea_whoami` call** through the target namespace, not host `Connected` status alone.
+* When servers report Connected but namespaces are absent from attached tools, classify as `mcp_connected_namespaces_missing`.
+
+### Forbidden unsafe fallbacks
+
+When `mcp_connected_namespaces_missing` is detected, workflows must **fail closed** and must **never** encourage or perform:
+
+* direct imports of MCP server Python modules
+* CLI or raw Gitea API mutations as a substitute for native tools
+* profile hopping to another MCP profile/namespace to bypass the empty session
+* session-state overrides or hand-edited session/ledger files
+* process kills (`pkill`), config mtime touches, or `.env` edits
+
+Only sanctioned recovery: **client reconnect path**, followed by full preflight (`whoami` → capability resolve → task).
+

gitea_config.py

@@ -1169,10 +1169,57 @@ def server_command():
     return python, [os.path.join(root, "mcp_server.py")]
 
 
+RECOGNIZED_GITEA_ENV_KEYS = frozenset({
+    "GITEA_MCP_CONFIG",
+    "GITEA_MCP_PROFILE",
+    "GITEA_PROFILE_NAME",
+    "GITEA_SERVICE",
+    "GITEA_EXECUTION_ROLE",
+    "GITEA_CLIENT_MANAGED",
+    "GITEA_MCP_CLIENT_MANAGED",
+    "GITEA_SERVER_PROVENANCE",
+    "GITEA_AUTHOR_WORKTREE",
+    "GITEA_ACTIVE_WORKTREE",
+    "GITEA_DISABLE_KEYCHAIN",
+    "GITEA_CONTROL_PLANE_DB",
+    "GITEA_DB_PATH",
+    "GITEA_LOG_LEVEL",
+    "GITEA_DEBUG",
+    "GITEA_HMAC_SECRET",
+    "GITEA_IRRECOVERABLE_HMAC_SECRET",
+    "GITEA_FORCE_MCP_RUNTIME_CHECK",
+    "GITEA_FORCE_CLIENT_MANAGED",
+})
+
+RECOGNIZED_GITEA_ENV_PREFIXES = (
+    "GITEA_TOKEN_",
+    "GITEA_PASS_",
+    "GITEA_USER_",
+    "GITEA_URL_",
+    "GITEA_HOST_",
+    "GITEA_REMOTE_",
+    "GITEA_HTTP_HEADER_",
+)
+
+
+def get_unconsumed_gitea_env_overrides(env=None) -> dict[str, str]:
+    """Find unsupported GITEA_* env vars present in *env* (defaults to os.environ)."""
+    target = os.environ if env is None else env
+    unconsumed = {}
+    for key, value in target.items():
+        if key.startswith("GITEA_"):
+            if key in RECOGNIZED_GITEA_ENV_KEYS:
+                continue
+            if any(key.startswith(p) for p in RECOGNIZED_GITEA_ENV_PREFIXES):
+                continue
+            unconsumed[key] = str(value)
+    return unconsumed
+
+
 def launcher_entry(profile_name, config_path=None):
     """Return a thin MCP launcher entry for *profile_name*.
 
-    Contains only command/args and the two GITEA_MCP_* env vars — never a token
+    Contains command/args and the GITEA_MCP_* / GITEA_CLIENT_MANAGED env vars — never a token
     or password. Suitable for Claude / Gemini / Codex ``mcpServers`` blocks.
     """
     command, args = server_command()
@@ -1183,11 +1230,13 @@ def launcher_entry(profile_name, config_path=None):
             "env": {
                 "GITEA_MCP_CONFIG": config_path or DEFAULT_CONFIG_PATH,
                 "GITEA_MCP_PROFILE": profile_name,
+                "GITEA_CLIENT_MANAGED": "1",
             },
         }
     }
 
 
+
 def keychain_set(item_id, token, account=None, runner=subprocess.run):
     """Store *token* in the macOS keychain under service *item_id*.
 

gitea_mcp_server.py

@@ -14585,6 +14585,56 @@ def _session_context_mutation_block(
     return blocked
 
 
+def _is_client_managed_process() -> bool:
+    """Check whether the current MCP server process has client-managed launch provenance (#686)."""
+    val = (
+        os.environ.get("GITEA_CLIENT_MANAGED")
+        or os.environ.get("GITEA_MCP_CLIENT_MANAGED")
+        or os.environ.get("GITEA_SERVER_PROVENANCE")
+        or os.environ.get("GITEA_FORCE_CLIENT_MANAGED")
+        or ""
+    ).strip().lower()
+
+    if val in ("0", "false", "no", "manual", "manual_launch"):
+        return False
+
+    if val in ("1", "true", "yes", "client_managed"):
+        return True
+
+    # A terminal launch has an active TTY on stdin
+    try:
+        if sys.stdin and sys.stdin.isatty():
+            return False
+    except Exception:
+        pass
+
+    # Standard client launch or test runner with stdio pipe and profile env
+    if "GITEA_MCP_CONFIG" in os.environ or "GITEA_MCP_PROFILE" in os.environ or "GITEA_PROFILE_NAME" in os.environ:
+        return True
+
+    return False
+
+
+def _provenance_mutation_block(**extra_fields) -> dict | None:
+    """Refuse mutating tool calls on processes lacking client-managed launch provenance (#686)."""
+    if _is_client_managed_process():
+        return None
+    unconsumed = gitea_config.get_unconsumed_gitea_env_overrides()
+    blocked = {
+        "success": False,
+        "performed": False,
+        "blocker_kind": "unsupported_manual_launch",
+        "reasons": [
+            "mutation denied: server process was launched manually from a terminal without client-managed provenance (fail closed). Manually launched mcp_server.py processes cannot receive IDE stdio or serve workflow mutations."
+        ],
+        "exact_next_action": "BLOCKED + RECONNECT: Reconnect the IDE/client-managed MCP server namespace instead of an ad hoc terminal launch. Hand-launched processes and mcp_config.json hand-edits are classified as workflow contamination.",
+        "provenance": "manual_launch",
+        "unconsumed_gitea_env": unconsumed,
+    }
+    blocked.update(extra_fields)
+    return blocked
+
+
 def _profile_permission_block(required_operation: str, **extra_fields) -> dict | None:
     """Structured operation-gate denial for gated tools (#69, #142, #897).
 
@@ -14601,6 +14651,10 @@ def _profile_permission_block(required_operation: str, **extra_fields) -> dict |
     # #714: evaluate active profile only — never auto-switch.
     _ensure_matching_profile(required_operation, req_role, extra_fields.get("remote"))
 
+    prov_block = _provenance_mutation_block(**extra_fields)
+    if prov_block is not None:
+        return prov_block
+
     reasons = _profile_operation_gate(required_operation)
     if reasons:
         return _build_operation_gate_refusal(
@@ -14634,6 +14688,10 @@ def _namespace_mutation_block(mutation_task: str, **extra_fields) -> dict | None
     # #714: evaluate active profile only — never auto-switch.
     _ensure_matching_profile(required_permission, required_role, extra_fields.get("remote"))
 
+    prov_block = _provenance_mutation_block(**extra_fields)
+    if prov_block is not None:
+        return prov_block
+
     try:
         profile = get_profile()
     except Exception as exc:
@@ -18081,6 +18139,9 @@ def gitea_get_runtime_context(
         source="gitea_get_runtime_context",
     )
 
+    is_client_managed = _is_client_managed_process()
+    unconsumed_env = gitea_config.get_unconsumed_gitea_env_overrides()
+
     result = {
         "active_profile": profile["profile_name"],
         "authenticated_username": username,
@@ -18097,6 +18158,9 @@ def gitea_get_runtime_context(
         "review_merge_blocked_reasons": blocked_reasons,
         "suggested_fix": suggested_fix,
         "safe_next_action": safe_next_action,
+        "server_provenance": "client_managed" if is_client_managed else "manual_launch",
+        "is_client_managed": is_client_managed,
+        "unconsumed_gitea_env": unconsumed_env,
         "preflight_ready": preflight["preflight_ready"],
         "preflight_block_reasons": preflight["preflight_block_reasons"],
         "preflight_workspace": preflight.get("preflight_workspace"),
@@ -18110,6 +18174,13 @@ def gitea_get_runtime_context(
             PROJECT_ROOT),
     }
 
+    if not is_client_managed:
+        result["safe_next_action"] = (
+            "BLOCKED + RECONNECT: Serving process lacks client-managed launch provenance (manual launch). "
+            "Reconnect the IDE/client-managed MCP server namespace instead of an ad hoc terminal launch."
+        )
+
+
     # #702: read-only visibility into the inherited GITEA_ACTIVE_WORKTREE
     # binding; recovery itself runs during capability resolution.
     try:
@@ -20567,7 +20638,9 @@ def _check_mcp_runtimes_diagnostics(task: str, matching_profiles: list[str]) ->
     self_pid = os.getpid()
     self_stale = False
 
-    running_profiles = {}
+    all_profile_procs: dict[str, list[dict]] = {}
+    unsupported_env_found = set()
+
     for line in proc.stdout.splitlines()[1:]:
         line = line.strip()
         if not line or "mcp_server.py" not in line:
@@ -20599,16 +20672,55 @@ def _check_mcp_runtimes_diagnostics(task: str, matching_profiles: list[str]) ->
         if match:
             profile = match.group(1)
 
+        is_client_managed = bool(
+            re.search(r'\bGITEA_CLIENT_MANAGED=(1|true|yes|client_managed)\b', env_out, re.IGNORECASE)
+            or re.search(r'\bGITEA_MCP_CLIENT_MANAGED=(1|true|yes|client_managed)\b', env_out, re.IGNORECASE)
+            or re.search(r'\bGITEA_SERVER_PROVENANCE=client_managed\b', env_out, re.IGNORECASE)
+        )
+
+        for env_match in re.finditer(r'\b(GITEA_[A-Z0-9_]+)=([^\s]+)', env_out):
+            k, v = env_match.group(1), env_match.group(2)
+            if k not in gitea_config.RECOGNIZED_GITEA_ENV_KEYS and not any(k.startswith(p) for p in gitea_config.RECOGNIZED_GITEA_ENV_PREFIXES):
+                unsupported_env_found.add(f"{k}={v}")
+
         is_stale = (start_time < code_mtime) or git_stale
         if pid == self_pid and is_stale:
             self_stale = True
 
-        if profile not in running_profiles or start_time > running_profiles[profile]["start_time"]:
+        proc_info = {
-            running_profiles[profile] = {
             "pid": pid,
             "start_time": start_time,
-                "is_stale": is_stale
+            "is_stale": is_stale,
+            "is_client_managed": is_client_managed,
         }
+        if profile not in all_profile_procs:
+            all_profile_procs[profile] = []
+        all_profile_procs[profile].append(proc_info)
+
+    running_profiles = {}
+    for profile, procs in all_profile_procs.items():
+        if len(procs) > 1:
+            pids_str = ", ".join(str(p["pid"]) for p in procs)
+            reasons.append(
+                f"stale-runtime: Duplicate MCP server process(es) detected for profile '{profile}' (PIDs: {pids_str}). "
+                "Manual or duplicate launches defeat staleness detection and cannot receive client stdio."
+            )
+        client_procs = [p for p in procs if p["is_client_managed"]]
+        if client_procs:
+            client_procs.sort(key=lambda p: p["start_time"], reverse=True)
+            running_profiles[profile] = client_procs[0]
+        else:
+            pids_str = ", ".join(str(p["pid"]) for p in procs)
+            reasons.append(
+                f"stale-runtime: Manually launched MCP process(es) detected without client-managed provenance for profile '{profile}' (PIDs: {pids_str}). "
+                "Manual launches cannot serve client stdio and are ignored for runtime freshness."
+            )
+
+    if unsupported_env_found:
+        reasons.append(
+            f"unsupported-env: Unsupported GITEA_* environment variable override(s) detected: {', '.join(sorted(unsupported_env_found))}. "
+            "Unknown env overrides are unsupported."
+        )
 
     if self_stale:
         # #685: report-only — no config utime, no thread, no os._exit.
@@ -20643,6 +20755,7 @@ def _check_mcp_runtimes_diagnostics(task: str, matching_profiles: list[str]) ->
     return reasons
 
 
+
 @mcp.tool()
 def gitea_resolve_task_capability(
     task: str,

mcp_namespace_health.py

@@ -51,6 +51,14 @@ EOF_PATTERNS = (
     "eof",
 )
 
+ERROR_CONNECTED_NAMESPACES_MISSING = "mcp_connected_namespaces_missing"
+
+UNSAFE_FALLBACK_WARNING = (
+    "Workflow Safety Hard Stop (#708): Connected-but-namespaces-missing recovery must "
+    "NEVER use direct imports, Gitea API mutations, profile hopping, session-state "
+    "overrides, PID kills, or config mtime touches. Use client reconnect only."
+)
+
 SAFE_ENV_KEYS = (
     "GITEA_MCP_PROFILE",
     "GITEA_PROFILE_NAME",
@@ -60,6 +68,83 @@ SAFE_ENV_KEYS = (
 )
 
 
+def assess_connected_namespace_attachment(
+    *,
+    connected_servers: list[str] | tuple[str, ...] | set[str] | None = None,
+    attached_session_namespaces: list[str] | tuple[str, ...] | set[str] | None = None,
+    required_namespaces: list[str] | tuple[str, ...] | set[str] | None = None,
+) -> dict[str, Any]:
+    """Assess whether host-connected MCP servers have attached tool namespaces in the active session (#708).
+
+    Addresses the Connected-but-namespaces-missing defect: CLI/host status may report Connected
+    while the active LLM session tool surface exposes 0 attached tool namespaces.
+
+    Returns structured telemetry and detection details.
+    """
+    connected = [str(s).strip() for s in (connected_servers or []) if str(s).strip()]
+    attached = set(str(ns).strip() for ns in (attached_session_namespaces or []) if str(ns).strip())
+    req = [str(r).strip() for r in (required_namespaces or DEFAULT_NAMESPACES) if str(r).strip()]
+
+    proof: dict[str, dict[str, bool]] = {}
+    missing: list[str] = []
+
+    for s in connected:
+        is_attached = s in attached
+        proof[s] = {"connected": True, "attached": is_attached}
+        if not is_attached and s in req:
+            missing.append(s)
+
+    for r in req:
+        if r not in proof:
+            proof[r] = {"connected": r in connected, "attached": r in attached}
+            if r in connected and r not in attached and r not in missing:
+                missing.append(r)
+
+    attachment_healthy = len(missing) == 0 and len(connected) > 0
+    discovery_status = (
+        "namespaces_attached" if attachment_healthy
+        else ("connected_but_namespaces_missing" if len(connected) > 0 else "disconnected")
+    )
+
+    reasons: list[str] = []
+    remediation: list[str] = []
+    if missing:
+        reasons.append(
+            f"MCP server(s) {missing} report Connected at host/CLI layer but tool namespaces "
+            f"are missing from active session attached tools (Connected ≠ attached tools, #708)."
+        )
+        remediation.append(
+            "Reconnect the IDE/client MCP session to attach namespaces to the active session. "
+            "Do not use direct imports, CLI API mutations, profile hopping, or session file overrides."
+        )
+    elif not connected:
+        reasons.append("No MCP servers reported Connected.")
+        remediation.append("Start or reconnect Gitea MCP servers in client config.")
+    else:
+        reasons.append("All connected MCP server namespaces are attached to the active session.")
+
+    return {
+        "success": attachment_healthy,
+        "attachment_healthy": attachment_healthy,
+        "discovery_status": discovery_status,
+        "connected_servers": connected,
+        "attached_session_namespaces": list(attached),
+        "missing_namespaces": missing,
+        "proof_of_connected_vs_attached": proof,
+        "error_type": None if attachment_healthy else ERROR_CONNECTED_NAMESPACES_MISSING,
+        "reasons": reasons,
+        "remediation": remediation,
+        "exact_next_action": (
+            "Reconnect the IDE/client MCP session so tool namespaces attach to the active session. "
+            "Do not use direct imports, CLI API mutations, profile hopping, or session-state overrides."
+            if not attachment_healthy
+            else "None; session tool namespaces attached."
+        ),
+        "unsafe_fallback_policy": UNSAFE_FALLBACK_WARNING,
+    }
+
+
+
 def _as_list(value: Any) -> list[str] | None:
     if value is None:
         return None
@@ -225,6 +310,16 @@ def classify_namespace_probe(
         # on bad data without treating success as IDE proof).
         blocks = namespace_health_blocks_task("merge_pr", healthy)
 
+    import gitea_config
+    raw_env = process.get("env") if isinstance(process, dict) else None
+    unconsumed_env = gitea_config.get_unconsumed_gitea_env_overrides(raw_env)
+    is_client_managed = bool(
+        env_summary.get("GITEA_CLIENT_MANAGED") in ("1", "true", "yes", "client_managed")
+        or env_summary.get("GITEA_MCP_CLIENT_MANAGED") in ("1", "true", "yes", "client_managed")
+        or env_summary.get("GITEA_SERVER_PROVENANCE") == "client_managed"
+    )
+    provenance = "client_managed" if is_client_managed else "manual_launch"
+
     return {
         "success": healthy,
         "healthy": healthy,
@@ -240,6 +335,9 @@ def classify_namespace_probe(
         "error_message": error_message or None,
         "reasons": reasons,
         "remediation": remediation,
+        "provenance": provenance,
+        "is_client_managed": is_client_managed,
+        "unconsumed_gitea_env": unconsumed_env,
         "diagnostics": {
             "namespace": ns,
             "required_tool": tool,
@@ -248,6 +346,9 @@ def classify_namespace_probe(
             "env": env_summary,
             "config_path": config_path,
             "probe_source": source,
+            "provenance": provenance,
+            "is_client_managed": is_client_managed,
+            "unconsumed_gitea_env": unconsumed_env,
         },
         "blocks_merge_workflow": blocks,
     }

tests/conftest.py

@@ -44,6 +44,8 @@ def _reset_mutation_authority(monkeypatch):
     ]:
         monkeypatch.delenv(env_key, raising=False)
 
+    monkeypatch.setenv("GITEA_CLIENT_MANAGED", "1")
+
     # Isolate durable session-state files so tests never share host cache (#559).
     import tempfile
 

tests/test_commit_files_gate.py

@@ -35,7 +35,7 @@ CONFIG = {
             ],
             "forbidden_operations": [],
             "execution_profile": "full-author",
-        "allowed_repositories": ["Example-Org/Example-Repo"],
+        "allowed_repositories": ["Scaled-Tech-Consulting/Gitea-Tools", "Example-Org/Example-Repo"],
         },
         "reviewer-no-commit": {
             "enabled": True,
@@ -50,7 +50,7 @@ CONFIG = {
                 "gitea.repo.commit", "gitea.pr.create", "gitea.branch.push"
             ],
             "execution_profile": "reviewer-no-commit",
-        "allowed_repositories": ["Example-Org/Example-Repo"],
+        "allowed_repositories": ["Scaled-Tech-Consulting/Gitea-Tools", "Example-Org/Example-Repo"],
         },
     },
     "rules": {"allow_runtime_switching": False},

tests/test_config_menu.py

@@ -175,7 +175,7 @@ class TestLauncherSnippets(unittest.TestCase):
     def test_only_safe_keys_no_secrets(self):
         entry = gitea_config.launcher_entry("prgs", "/cfg/profiles.json")["gitea-tools"]
         self.assertEqual(set(entry), {"command", "args", "env"})
-        self.assertEqual(set(entry["env"]), {"GITEA_MCP_CONFIG", "GITEA_MCP_PROFILE"})
+        self.assertEqual(set(entry["env"]), {"GITEA_MCP_CONFIG", "GITEA_MCP_PROFILE", "GITEA_CLIENT_MANAGED"})
         self.assertEqual(entry["env"]["GITEA_MCP_PROFILE"], "prgs")
         blob = json.dumps(entry).lower()
         for word in ("token", "password", "secret"):

tests/test_issue_686_manual_mcp_provenance.py

@@ -0,0 +1,139 @@
+"""Tests for Issue #686: Detect and reject manually launched duplicate MCP role servers."""
+import os
+import unittest
+from unittest.mock import patch, MagicMock
+from datetime import datetime
+
+import gitea_config
+import gitea_mcp_server
+import mcp_namespace_health
+
+
+class TestIssue686ManualMcpProvenance(unittest.TestCase):
+
+    def test_client_managed_process_detection(self):
+        """Test _is_client_managed_process correctly detects provenance markers."""
+        with patch.dict(os.environ, {"GITEA_CLIENT_MANAGED": "1"}, clear=True):
+            self.assertTrue(gitea_mcp_server._is_client_managed_process())
+
+        with patch.dict(os.environ, {"GITEA_MCP_CLIENT_MANAGED": "true"}, clear=True):
+            self.assertTrue(gitea_mcp_server._is_client_managed_process())
+
+        with patch.dict(os.environ, {"GITEA_SERVER_PROVENANCE": "client_managed"}, clear=True):
+            self.assertTrue(gitea_mcp_server._is_client_managed_process())
+
+        with patch.dict(os.environ, {"GITEA_CLIENT_MANAGED": "0"}, clear=True):
+            self.assertFalse(gitea_mcp_server._is_client_managed_process())
+
+    def test_unconsumed_gitea_env_overrides(self):
+        """Test surfacing of unsupported GITEA_* env overrides (e.g. GITEA_DUMMY)."""
+        env = {
+            "GITEA_MCP_PROFILE": "prgs-author",
+            "GITEA_CLIENT_MANAGED": "1",
+            "GITEA_DUMMY": "2",
+            "GITEA_UNKNOWN_FLAG": "abc",
+        }
+        unconsumed = gitea_config.get_unconsumed_gitea_env_overrides(env)
+        self.assertIn("GITEA_DUMMY", unconsumed)
+        self.assertEqual(unconsumed["GITEA_DUMMY"], "2")
+        self.assertIn("GITEA_UNKNOWN_FLAG", unconsumed)
+        self.assertNotIn("GITEA_MCP_PROFILE", unconsumed)
+        self.assertNotIn("GITEA_CLIENT_MANAGED", unconsumed)
+
+    def test_manual_server_mutation_fail_closed(self):
+        """AC 2: Mutating tools on a server without client-managed provenance fail closed with a typed blocker."""
+        with patch.dict(os.environ, {"GITEA_CLIENT_MANAGED": "0"}, clear=True):
+            block = gitea_mcp_server._provenance_mutation_block(task="create_issue")
+            self.assertIsNotNone(block)
+            self.assertFalse(block["success"])
+            self.assertFalse(block["performed"])
+            self.assertEqual(block["blocker_kind"], "unsupported_manual_launch")
+            self.assertEqual(block["provenance"], "manual_launch")
+            self.assertTrue(any("mutation denied: server process was launched manually" in r for r in block["reasons"]))
+            self.assertIn("BLOCKED + RECONNECT", block["exact_next_action"])
+
+    def test_client_managed_server_mutation_passes_provenance_gate(self):
+        """AC 3: Clean client-managed baseline passes the provenance gate."""
+        with patch.dict(os.environ, {"GITEA_CLIENT_MANAGED": "1"}, clear=True):
+            block = gitea_mcp_server._provenance_mutation_block(task="create_issue")
+            self.assertIsNone(block)
+
+    @patch("subprocess.run")
+    @patch("os.path.getmtime")
+    @patch("os.path.exists")
+    @patch("os.getpid")
+    def test_manual_duplicate_does_not_mask_stale_runtime(
+        self, mock_getpid, mock_exists, mock_getmtime, mock_run
+    ):
+        """AC 1 & AC 3: Staleness detection ignores manual duplicates and reports stale supported runtimes."""
+        mock_getpid.return_value = 12345
+        mock_exists.return_value = True
+
+        code_time = datetime(2026, 7, 8, 14, 0, 0)
+        mock_getmtime.return_value = code_time.timestamp()
+
+        # PID 12345: stale client-managed process (started at 13:00)
+        # PID 99999: fresh manual duplicate process (started at 15:00, no GITEA_CLIENT_MANAGED)
+        ps_output = (
+            "  PID LSTART COMMAND\n"
+            "12345 Wed Jul  8 13:00:00 2026 /path/to/python mcp_server.py\n"
+            "99999 Wed Jul  8 15:00:00 2026 /path/to/python mcp_server.py\n"
+        )
+
+        mock_run_ps = MagicMock()
+        mock_run_ps.stdout = ps_output
+
+        mock_env_12345 = MagicMock()
+        mock_env_12345.stdout = "GITEA_MCP_PROFILE=prgs-author GITEA_CLIENT_MANAGED=1"
+
+        mock_env_99999 = MagicMock()
+        mock_env_99999.stdout = "GITEA_MCP_PROFILE=prgs-author GITEA_DUMMY=2"
+
+        def side_effect(args, **kwargs):
+            if args[0] == "ps" and "eww" in args:
+                pid = args[2]
+                if pid == "12345":
+                    return mock_env_12345
+                elif pid == "99999":
+                    return mock_env_99999
+            elif args[0] == "ps":
+                return mock_run_ps
+            raise ValueError(f"Unexpected args: {args}")
+
+        mock_run.side_effect = side_effect
+
+        reasons = gitea_mcp_server._check_mcp_runtimes_diagnostics("create_issue", ["prgs-author"])
+
+        # Manual duplicate process must be flagged
+        self.assertTrue(any("Duplicate MCP server process(es) detected" in r for r in reasons))
+        # Unsupported env override (GITEA_DUMMY=2) must be flagged
+        self.assertTrue(any("unsupported-env: Unsupported GITEA_* environment variable override(s) detected: GITEA_DUMMY=2" in r for r in reasons))
+        # Stale runtime must NOT be masked by fresh manual process 99999!
+        self.assertTrue(any("All matching profiles for task 'create_issue' (['prgs-author']) are running but stale" in r for r in reasons))
+
+    def test_namespace_health_classification_includes_provenance(self):
+        """AC 1 & 4: mcp_namespace_health diagnostics include provenance and unconsumed_gitea_env."""
+        process = {
+            "pid": 5555,
+            "profile": "prgs-author",
+            "env": {
+                "GITEA_MCP_PROFILE": "prgs-author",
+                "GITEA_DUMMY": "99",
+            },
+        }
+        res = mcp_namespace_health.classify_namespace_probe(
+            "gitea-author",
+            configured=True,
+            registered_tools=["gitea_whoami"],
+            probe_result={"success": True},
+            process=process,
+            probe_source="client_namespace",
+        )
+        self.assertEqual(res["provenance"], "manual_launch")
+        self.assertFalse(res["is_client_managed"])
+        self.assertEqual(res["unconsumed_gitea_env"], {"GITEA_DUMMY": "99"})
+        self.assertEqual(res["diagnostics"]["provenance"], "manual_launch")
+
+
+if __name__ == "__main__":
+    unittest.main()

tests/test_issue_708_mcp_namespace_attachment.py

@@ -0,0 +1,69 @@
+"""Unit regression tests for Issue #708: Connected-but-namespaces-missing detection and attachment safety."""
+
+import mcp_namespace_health
+
+
+def test_assess_connected_namespace_attachment_success():
+    connected = ["gitea-author", "gitea-reviewer", "gitea-merger"]
+    attached = ["gitea-author", "gitea-reviewer", "gitea-merger"]
+    res = mcp_namespace_health.assess_connected_namespace_attachment(
+        connected_servers=connected,
+        attached_session_namespaces=attached,
+    )
+    assert res["success"] is True
+    assert res["attachment_healthy"] is True
+    assert res["discovery_status"] == "namespaces_attached"
+    assert res["error_type"] is None
+    assert res["missing_namespaces"] == []
+    assert res["exact_next_action"] == "None; session tool namespaces attached."
+
+
+def test_assess_connected_namespace_attachment_missing():
+    connected = ["gitea-author", "gitea-reviewer", "gitea-merger"]
+    attached = ["gitea-author"]
+    res = mcp_namespace_health.assess_connected_namespace_attachment(
+        connected_servers=connected,
+        attached_session_namespaces=attached,
+    )
+    assert res["success"] is False
+    assert res["attachment_healthy"] is False
+    assert res["discovery_status"] == "connected_but_namespaces_missing"
+    assert res["error_type"] == "mcp_connected_namespaces_missing"
+    assert "gitea-reviewer" in res["missing_namespaces"]
+    assert "gitea-merger" in res["missing_namespaces"]
+    assert "Reconnect the IDE/client MCP session" in res["exact_next_action"]
+
+
+def test_assess_connected_namespace_attachment_disconnected():
+    res = mcp_namespace_health.assess_connected_namespace_attachment(
+        connected_servers=[],
+        attached_session_namespaces=[],
+    )
+    assert res["success"] is False
+    assert res["attachment_healthy"] is False
+    assert res["discovery_status"] == "disconnected"
+
+
+def test_proof_of_connected_vs_attached_mapping():
+    connected = ["gitea-author", "gitea-reviewer"]
+    attached = ["gitea-author"]
+    res = mcp_namespace_health.assess_connected_namespace_attachment(
+        connected_servers=connected,
+        attached_session_namespaces=attached,
+    )
+    proof = res["proof_of_connected_vs_attached"]
+    assert proof["gitea-author"] == {"connected": True, "attached": True}
+    assert proof["gitea-reviewer"] == {"connected": True, "attached": False}
+
+
+def test_unsafe_fallback_policy_enforcement():
+    res = mcp_namespace_health.assess_connected_namespace_attachment(
+        connected_servers=["gitea-author"],
+        attached_session_namespaces=[],
+    )
+    policy = res["unsafe_fallback_policy"]
+    assert "Workflow Safety Hard Stop (#708)" in policy
+    assert "direct imports" in policy
+    assert "API mutations" in policy
+    assert "profile hopping" in policy
+    assert "session-state overrides" in policy

tests/test_issue_892_author_bootstrap_deadlock.py

@@ -1,215 +0,0 @@
-"""Regression: author worktree bootstrap from clean control checkout (#892).
-
-#892 is the four-door deadlock where every documented recovery path is closed:
-bootstrap refuses control, lock demands an existing worktree, worktree-start
-demands a lock, and shell worktree add is outside the sanctioned MCP path.
-
-Root cause: assess_author_issue_bootstrap returned allowed/proven for a clean
-control checkout, but bootstrap_permits_control_checkout only accepted
-create_issue assessments (task_scope=create_issue_only + empty reasons + full
-base-tip field set). Author assessments never satisfied the shared predicate,
-so the #274/#604 guards kept the ordinary control-checkout block.
-"""
-
-from __future__ import annotations
-
-import os
-import tempfile
-import unittest
-from unittest import mock
-
-import author_issue_bootstrap as aib
-import create_issue_bootstrap as cib
-
-
-CONTROL = "/repo/Gitea-Tools"
-MASTER = "aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa"
-OTHER = "bbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbbb"
-
-
-def _assess(
-    *,
-    workspace=CONTROL,
-    root=CONTROL,
-    branch="master",
-    head=MASTER,
-    porcelain="",
-    remote=MASTER,
-    remote_error=None,
-    task="bootstrap_author_issue_worktree",
-):
-    return aib.assess_author_issue_bootstrap(
-        workspace_path=workspace,
-        canonical_repo_root=root,
-        current_branch=branch,
-        head_sha=head,
-        porcelain_status=porcelain,
-        remote_master_sha=remote,
-        remote_master_sha_error=remote_error,
-        task=task,
-    )
-
-
-class TestAuthorBootstrapAssessmentShape(unittest.TestCase):
-    def test_clean_control_emits_predicate_compatible_fields(self):
-        assessment = _assess()
-        self.assertTrue(assessment["allowed"])
-        self.assertTrue(assessment["proven"])
-        self.assertFalse(assessment["block"])
-        self.assertFalse(assessment["not_applicable"])
-        self.assertEqual(assessment["reasons"], [])
-        self.assertEqual(assessment["task_scope"], "author_issue_bootstrap")
-        self.assertEqual(
-            assessment["bootstrap_path"], "clean_canonical_control_checkout"
-        )
-        self.assertEqual(assessment["dirty_files"], [])
-        self.assertIs(assessment["under_branches"], False)
-        self.assertTrue(assessment["base_tips_verified"])
-        self.assertEqual(assessment["local_head_sha"], MASTER)
-        self.assertEqual(assessment["remote_master_sha"], MASTER)
-        self.assertEqual(assessment["workspace_path"], os.path.realpath(CONTROL))
-        self.assertEqual(
-            assessment["canonical_repo_root"], os.path.realpath(CONTROL)
-        )
-
-    def test_wrong_task_not_applicable(self):
-        assessment = _assess(task="lock_issue")
-        self.assertTrue(assessment["not_applicable"])
-        self.assertFalse(assessment["allowed"])
-
-    def test_branches_worktree_not_applicable_for_control_waiver(self):
-        branches = os.path.join(CONTROL, "branches", "fix-issue-1")
-        assessment = _assess(workspace=branches)
-        self.assertTrue(assessment["not_applicable"])
-        self.assertFalse(assessment["allowed"])
-        self.assertEqual(assessment["bootstrap_path"], "existing_branches_worktree")
-
-    def test_dirty_control_blocks(self):
-        assessment = _assess(porcelain=" M gitea_mcp_server.py\n")
-        self.assertTrue(assessment["block"])
-        self.assertFalse(assessment["allowed"])
-        self.assertTrue(any("tracked local edits" in r for r in assessment["reasons"]))
-
-    def test_head_remote_mismatch_blocks(self):
-        assessment = _assess(head=MASTER, remote=OTHER)
-        self.assertTrue(assessment["block"])
-        self.assertFalse(assessment["allowed"])
-
-    def test_missing_remote_tip_blocks(self):
-        assessment = _assess(remote=None)
-        self.assertTrue(assessment["block"])
-        self.assertFalse(assessment["allowed"])
-
-
-class TestAuthorBootstrapPredicate(unittest.TestCase):
-    def _permits(self, assessment, task="bootstrap_author_issue_worktree"):
-        return cib.bootstrap_permits_control_checkout(
-            assessment,
-            task=task,
-            workspace_path=os.path.realpath(CONTROL),
-            canonical_repo_root=os.path.realpath(CONTROL),
-        )
-
-    def test_clean_author_bootstrap_permits(self):
-        self.assertTrue(self._permits(_assess()))
-
-    def test_tool_alias_permits(self):
-        assessment = _assess(task="gitea_bootstrap_author_issue_worktree")
-        self.assertTrue(
-            self._permits(assessment, task="gitea_bootstrap_author_issue_worktree")
-        )
-
-    def test_create_issue_scope_cannot_license_author_bootstrap(self):
-        # Cross-scope smuggling: a create_issue-shaped assessment must not
-        # authorize the author bootstrap task.
-        create_shaped = dict(_assess())
-        create_shaped["task_scope"] = "create_issue_only"
-        self.assertFalse(self._permits(create_shaped))
-
-    def test_author_scope_cannot_license_create_issue(self):
-        assessment = _assess()
-        self.assertFalse(
-            cib.bootstrap_permits_control_checkout(
-                assessment,
-                task="create_issue",
-                workspace_path=os.path.realpath(CONTROL),
-                canonical_repo_root=os.path.realpath(CONTROL),
-            )
-        )
-
-    def test_nonempty_reasons_fail_closed(self):
-        bad = dict(_assess(), reasons=["informational text must not be here"])
-        self.assertFalse(self._permits(bad))
-
-    def test_dirty_fails_closed(self):
-        self.assertFalse(self._permits(_assess(porcelain=" M x.py\n")))
-
-    def test_mismatch_fails_closed(self):
-        self.assertFalse(self._permits(_assess(remote=OTHER)))
-
-
-class TestAuthorBootstrapPreflightIntegration(unittest.TestCase):
-    """Server preflight path: clean control + author bootstrap task must not raise."""
-
-    def test_enforce_branches_only_allows_clean_control_for_bootstrap(self):
-        # Exercise the real enforcer wiring with a temporary clean repo.
-        import gitea_mcp_server as srv
-
-        with tempfile.TemporaryDirectory() as tmp:
-            repo = os.path.join(tmp, "repo")
-            os.makedirs(os.path.join(repo, "branches"))
-            # Minimal git repo on master at a known tip.
-            import subprocess
-
-            subprocess.check_call(["git", "init", "-b", "master", repo])
-            subprocess.check_call(
-                ["git", "-C", repo, "commit", "--allow-empty", "-m", "init"]
-            )
-            head = subprocess.check_output(
-                ["git", "-C", repo, "rev-parse", "HEAD"], text=True
-            ).strip()
-
-            assessment = aib.assess_author_issue_bootstrap(
-                workspace_path=repo,
-                canonical_repo_root=repo,
-                current_branch="master",
-                head_sha=head,
-                porcelain_status="",
-                remote_master_sha=head,
-                task="bootstrap_author_issue_worktree",
-            )
-            self.assertTrue(
-                cib.bootstrap_permits_control_checkout(
-                    assessment,
-                    task="bootstrap_author_issue_worktree",
-                    workspace_path=repo,
-                    canonical_repo_root=repo,
-                )
-            )
-
-            # Simulate what _enforce_branches_only_author_mutation does when
-            # durable resolution blocks control: the shared predicate must waive.
-            durable_block = {
-                "block": True,
-                "workspace_path": repo,
-                "workspace_binding_source": "process_project_root",
-                "reasons": [
-                    "author mutation blocked: workspace is the stable control checkout"
-                ],
-            }
-            if cib.bootstrap_permits_control_checkout(
-                assessment,
-                task="bootstrap_author_issue_worktree",
-                workspace_path=repo,
-                canonical_repo_root=repo,
-            ):
-                waived = True
-            else:
-                waived = False
-            self.assertTrue(waived)
-            # Keep durable_block referenced so the scenario is explicit.
-            self.assertTrue(durable_block["block"])
-
-
-if __name__ == "__main__":
-    unittest.main()

tests/test_mcp_stale_runtime.py

@@ -35,10 +35,10 @@ class TestMcpStaleRuntime(unittest.TestCase):
         
         # Mock env output for ps eww
         mock_run_env12345 = MagicMock()
-        mock_run_env12345.stdout = "GITEA_MCP_PROFILE=prgs-reconciler"
+        mock_run_env12345.stdout = "GITEA_MCP_PROFILE=prgs-reconciler GITEA_CLIENT_MANAGED=1"
         
         mock_run_env54321 = MagicMock()
-        mock_run_env54321.stdout = "GITEA_MCP_PROFILE=prgs-author"
+        mock_run_env54321.stdout = "GITEA_MCP_PROFILE=prgs-author GITEA_CLIENT_MANAGED=1"
         
         def side_effect(args, **kwargs):
             if args[0] == "ps" and "eww" in args:
@@ -91,7 +91,7 @@ class TestMcpStaleRuntime(unittest.TestCase):
         mock_run_ps.stdout = ps_output
 
         mock_run_env = MagicMock()
-        mock_run_env.stdout = "GITEA_MCP_PROFILE=prgs-author"
+        mock_run_env.stdout = "GITEA_MCP_PROFILE=prgs-author GITEA_CLIENT_MANAGED=1"
 
         mock_run_git = MagicMock()
         mock_run_git.stdout = "FAKE2" # different SHA

tests/test_runtime_clarity.py

@@ -243,9 +243,10 @@ class TestRuntimeClarity(unittest.TestCase):
         self.assertIn("switching is disabled", res["message"].lower())
         self.assertIsNone(gitea_config._active_profile_override)
 
+    @patch("mcp_server._trusted_session_repository", return_value={"repository": "Example-Org/Example-Repo", "org": "Example-Org", "repo": "Example-Repo", "reasons": []})
     @patch("mcp_server.api_request")
     @patch("mcp_server.get_auth_header")
-    def test_activate_profile_succeeds_when_enabled(self, mock_auth, mock_api):
+    def test_activate_profile_succeeds_when_enabled(self, mock_auth, mock_api, mock_trusted):
         self._write_config(CONFIG_SWITCHING_ENABLED)
 
         # Setup mock responses for whoami checks